JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UPK3BL1_chr7_102632025_102647791	0/0	a0002	263	17	0	5	10	1	1	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	a0003	263	6	0	1	5	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	a0004	263	5	1	0	3	0	1	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	a0005	263	4	0	0	4	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	a0006	263	1	0	0	0	0	1	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	a0007	263	1	0	0	1	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	a0008	263	1	1	0	0	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	a0009	263	1	0	0	1	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL2_chr7_102532919_102548696	0/0	a0000	0	7	0	5	0	1	1	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	1/1	a0001	263	114	19	21	58	3	11	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	a0002	263	41	0	6	27	3	5	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	a0003	263	10	0	3	5	1	1	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	a0004	263	3	3	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	a0005	263	2	0	1	0	1	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	a0006	263	2	2	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	a0007	263	2	0	0	0	0	2	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	a0008	263	1	0	0	0	1	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3B_chr7_76505552_76521522	0/1	a0001	276	180	59	38	67	5	10	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	a0002	276	144	16	25	77	5	21	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	1/0	a0003	276	5	4	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	a0004	276	3	3	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	a0005	276	2	0	2	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	a0006	276	2	0	0	0	0	2	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	a0007	276	1	0	0	1	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	a0008	276	1	0	1	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	a0009	276	1	0	0	0	0	1	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	a0010	276	1	0	0	1	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPP1_chr7_48084265_48113736	1/1	a0001	310	425	93	76	197	12	45	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	a0002	310	1	0	0	1	0	0	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	a0003	310	1	0	0	0	0	1	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	a0004	310	1	1	0	0	0	0	copy fasta	UPP1	chr7	48084265	48113736
UPP2_chr2_158096876_158141154	1/1	a0001	317	264	58	61	108	9	26	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	a0002	317	73	34	7	27	2	3	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	a0003	317	2	2	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	a0004	117	1	0	0	0	1	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	a0005	317	1	0	0	1	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	a0006	317	1	0	0	0	0	1	copy fasta	UPP2	chr2	158096876	158141154
UPRT_chrX_75269085_75309885	1/1	a0001	309	257	74	58	84	9	30	copy fasta	UPRT	chrX	75269085	75309885
UQCC1_chr20_35297578_35416973	1/0	a0001	299	151	54	20	45	7	24	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/1	a0002	299	97	28	19	36	5	8	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	a0003	299	4	4	0	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	a0004	299	2	2	0	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	a0005	299	1	0	1	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	a0006	47	1	0	0	1	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC2_chr6_33691764_33716700	1/1	a0001	126	396	93	67	180	14	40	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	a0002	126	3	0	3	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	a0003	126	1	1	0	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	a0004	126	1	0	0	1	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	a0005	126	1	0	0	1	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC3_chr11_62666673_62678686	0/1	a0001	93	239	50	53	100	8	27	copy fasta	UQCC3	chr11	62666673	62678686