JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UQCC3_chr11_62666673_62678686	1/0	a0002	93	89	42	23	12	2	9	copy fasta	UQCC3	chr11	62666673	62678686
UQCC4_chr16_1414752_1425747	1/1	a0001	132	351	84	69	134	16	46	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	a0002	132	6	6	0	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	a0003	132	3	1	2	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	a0004	132	2	0	2	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	a0005	132	2	1	1	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC5_chr3_52531605_52546890	1/1	a0001	70	388	92	84	150	16	44	copy fasta	UQCC5	chr3	52531605	52546890
UQCC6_chr12_103945194_103962215	1/1	a0001	71	397	89	68	172	16	50	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	a0002	71	65	11	6	46	2	0	copy fasta	UQCC6	chr12	103945194	103962215
UQCR10_chr22_29762369_29775413	1/1	a0001	63	351	60	68	166	16	39	copy fasta	UQCR10	chr22	29762369	29775413
UQCR10_chr22_29762369_29775413	0/0	a0002	63	63	38	8	16	0	1	copy fasta	UQCR10	chr22	29762369	29775413
UQCR11_chr19_1592169_1610462	1/1	a0001	56	363	95	74	138	14	40	copy fasta	UQCR11	chr19	1592169	1610462
UQCR11_chr19_1592169_1610462	0/0	a0002	56	1	1	0	0	0	0	copy fasta	UQCR11	chr19	1592169	1610462
UQCRB_chr8_96217947_96240545	1/1	a0001	111	377	95	70	156	16	38	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	a0002	111	2	0	0	0	0	2	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	a0003	111	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	a0004	111	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	a0005	111	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	a0006	111	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	a0007	111	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRC1_chr3_48594002_48614646	1/1	a0001	480	292	87	60	96	13	34	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	a0002	480	7	0	0	7	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	a0003	480	5	0	0	5	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	a0004	480	2	1	1	0	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	a0005	480	1	0	1	0	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	a0006	480	1	0	0	0	1	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC2_chr16_21948361_21988660	1/1	a0001	453	330	63	53	168	4	40	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	a0002	453	18	16	2	0	0	0	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	a0003	453	11	10	1	0	0	0	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	a0004	453	2	0	0	2	0	0	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	a0005	453	1	1	0	0	0	0	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRFS1_chr19_29200320_29218151	0/1	a0001	274	416	87	73	203	8	44	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	1/0	a0002	274	19	7	7	0	4	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	a0003	274	1	0	0	1	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRHL_chr1_15802374_15812649	0/0	a0001	91	312	58	63	139	14	38	copy fasta	UQCRHL	chr1	15802374	15812649
UQCRHL_chr1_15802374_15812649	0/0	a0002	91	32	19	5	6	1	1	copy fasta	UQCRHL	chr1	15802374	15812649
UQCRHL_chr1_15802374_15812649	0/0	a0003	91	19	11	2	0	1	5	copy fasta	UQCRHL	chr1	15802374	15812649
UQCRHL_chr1_15802374_15812649	0/0	a0004	91	1	0	0	1	0	0	copy fasta	UQCRHL	chr1	15802374	15812649
UQCRH_chr1_46298698_46321776	1/1	a0001	91	414	91	76	198	11	36	copy fasta	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	a0002	91	18	0	5	0	3	10	copy fasta	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	a0003	91	1	0	1	0	0	0	copy fasta	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	a0004	83	1	1	0	0	0	0	copy fasta	UQCRH	chr1	46298698	46321776
UQCRQ_chr5_132861642_132873847	1/1	a0001	82	451	95	78	218	16	42	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	a0002	82	1	1	0	0	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
URAD_chr13_27972717_27993693	1/1	a0001	173	332	84	49	151	12	34	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	a0002	173	68	1	21	36	5	5	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	a0003	173	23	11	5	3	1	3	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	a0004	173	2	0	1	1	0	0	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	a0005	60	1	1	0	0	0	0	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	a0006	173	1	0	0	1	0	0	copy fasta	URAD	chr13	27972717	27993693