JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
URAD_chr13_27972717_27993693	0/0	a0007	173	1	1	0	0	0	0	copy fasta	URAD	chr13	27972717	27993693
URB1_chr21_32306018_32398012	0/0	a0001	2271	166	51	32	55	7	21	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	1/0	a0002	2271	58	2	11	38	2	4	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/1	a0003	2271	45	21	11	9	1	2	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0004	2271	15	0	1	13	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0005	2271	12	0	0	12	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0006	2271	5	0	0	5	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0007	2271	4	0	4	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0008	2271	3	3	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0009	2271	3	3	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0010	2271	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0011	2271	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0012	2271	2	0	0	2	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0013	2271	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0014	2271	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0015	2271	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0016	2271	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0017	2271	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0018	2271	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0019	2271	1	0	0	0	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0020	2271	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0021	2271	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0022	2271	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0023	2271	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0024	2271	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0025	2271	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0026	2271	1	0	0	0	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0027	2271	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0028	2271	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0029	2271	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0030	2271	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	a0031	2271	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB2_chr1_229621247_229665200	0/1	a0001	1524	121	20	20	57	6	17	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	1/0	a0002	1524	115	47	23	27	3	14	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0003	1524	94	12	17	59	1	5	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0004	1524	4	3	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0005	1524	3	3	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0006	1524	3	0	0	3	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0007	1524	3	3	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0008	1524	2	2	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0009	1524	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0010	1524	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0011	1524	1	0	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0012	1524	1	0	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0013	1524	1	0	0	0	0	1	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0014	1524	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0015	1524	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0016	1524	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0017	1524	1	0	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	a0018	1524	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200