JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
URB2_chr1_229621247_229665200	0/0	a0019	1524	1	0	0	0	0	1	copy fasta	URB2	chr1	229621247	229665200
URGCP_chr7_43870913_43911596	1/0	a0001	931	225	50	41	101	14	18	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/1	a0002	931	170	42	35	75	4	13	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	a0003	931	3	0	0	1	0	2	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	a0004	931	1	0	0	1	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	a0005	931	1	1	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	a0006	931	1	0	0	0	0	1	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	a0007	931	1	1	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	a0008	931	1	0	0	1	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	a0009	931	1	0	0	1	0	0	copy fasta	URGCP	chr7	43870913	43911596
URI1_chr19_29937239_30021612	0/1	a0001	534	203	41	41	85	10	25	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	1/0	a0002	535	109	28	19	52	0	9	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	a0003	535	13	13	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	a0004	534	2	2	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	a0005	534	1	0	0	1	0	0	copy fasta	URI1	chr19	29937239	30021612
URM1_chr9_128366374_128397016	1/1	a0001	101	343	85	44	166	10	36	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	a0002	101	1	1	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
UROC1_chr3_126476166_126522773	1/1	a0001	676	345	74	67	154	11	37	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0002	676	11	7	3	0	0	1	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0003	676	5	0	1	0	1	3	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0004	676	4	4	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0005	284	2	0	0	2	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0006	676	2	0	0	0	2	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0007	676	2	2	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0008	676	2	0	0	2	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0009	676	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0010	676	1	0	0	0	0	1	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0011	676	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0012	676	1	0	0	1	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0013	676	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0014	676	1	0	0	1	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	a0015	676	1	0	1	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROD_chr1_45007254_45020575	1/1	a0001	367	400	92	74	174	16	42	copy fasta	UROD	chr1	45007254	45020575
UROS_chr10_125783586_125828258	1/0	a0001	265	393	84	67	190	14	37	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	a0002	265	9	0	1	6	0	2	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/1	a0003	265	3	0	0	0	0	2	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	a0004	265	1	1	0	0	0	0	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	a0005	265	1	0	0	0	0	1	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	a0006	265	1	1	0	0	0	0	copy fasta	UROS	chr10	125783586	125828258
USB1_chr16_57996407_58026618	1/1	a0001	265	308	91	50	122	14	29	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	a0002	265	24	0	6	13	0	5	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	a0003	265	3	3	0	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	a0004	265	1	0	0	1	0	0	copy fasta	USB1	chr16	57996407	58026618
USE1_chr19_17210357_17224829	0/1	a0001	259	400	100	71	166	18	44	copy fasta	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	1/0	a0002	259	17	0	0	16	0	0	copy fasta	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	a0003	259	5	0	1	4	0	0	copy fasta	USE1	chr19	17210357	17224829
USF1_chr1_161034251_161050977	1/1	a0001	310	396	80	72	180	18	44	copy fasta	USF1	chr1	161034251	161050977
USF2_chr19_35263962_35284821	1/1	a0001	346	424	98	75	195	12	42	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	a0002	346	1	0	0	1	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	a0003	321	1	0	1	0	0	0	copy fasta	USF2	chr19	35263962	35284821