JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BRD2_chr6_32963594_32986501	0/0	a0006	801	2	0	2	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0007	801	1	0	1	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0008	801	1	0	0	1	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0009	801	1	0	0	1	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0010	801	1	0	1	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0011	801	1	0	0	0	0	1	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0012	801	1	1	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0013	801	1	0	0	0	0	1	copy fasta	BRD2	chr6	32963594	32986501
BRD3OS_chr9_134020481_134036587	0/0	a0000	0	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	1/1	a0001	84	333	94	60	121	14	42	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3_chr9_134025305_134073026	1/1	a0001	726	325	88	63	122	13	37	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	a0002	726	5	0	4	0	0	1	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	a0003	726	2	1	1	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	a0004	726	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	a0005	726	1	0	0	0	1	0	copy fasta	BRD3	chr9	134025305	134073026
BRD4_chr19_15230519_15337539	1/1	a0001	1362	164	54	32	45	5	26	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0002	817	15	6	6	3	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0003	1345	8	3	2	2	0	1	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0004	817	7	1	3	0	1	2	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0005	793	3	1	1	0	0	1	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0006	1362	2	0	0	2	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0007	1362	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0008	412	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0009	1362	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0010	817	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0011	1367	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0012	1362	1	0	1	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0013	1362	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0014	1362	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	a0015	1362	1	0	1	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD7_chr16_50310957_50373988	1/1	a0001	651	383	77	79	172	16	37	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0002	651	6	6	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0003	651	4	4	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0004	651	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0005	651	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0006	651	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0007	651	1	0	0	1	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0008	651	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0009	651	1	0	0	1	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0010	651	1	0	0	0	0	1	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0011	651	1	0	1	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	a0012	651	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD8_chr5_138134770_138183630	0/1	a0001	1235	316	55	61	158	10	31	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	a0002	1235	27	8	7	2	2	8	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	1/0	a0003	1235	10	9	0	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	a0004	1235	10	9	1	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	a0005	1235	4	3	1	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	a0006	1235	3	2	1	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	a0007	1235	3	0	1	0	2	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	a0008	1235	1	0	0	0	0	1	copy fasta	BRD8	chr5	138134770	138183630