JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USH1G_chr17_74911083_74928255	0/0	a0010	461	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH2A_chr1_215617891_216428448	0/0	a0001	5202	2	0	1	0	0	1	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0002	5202	2	0	2	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0003	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0004	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0005	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0006	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0007	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0008	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0009	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0010	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0011	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0012	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	1/0	a0013	5202	1	0	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0014	5202	1	0	0	0	1	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0015	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0016	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0017	5202	1	0	0	0	1	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0018	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/1	a0019	5202	1	0	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0020	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0021	5202	1	0	0	0	0	1	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0022	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0023	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0024	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0025	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0026	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0027	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0028	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0029	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0030	5202	1	0	0	0	0	1	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0031	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0032	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0033	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0034	5202	1	0	0	0	1	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0035	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0036	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0037	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0038	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0039	5202	1	0	0	0	1	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0040	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0041	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0042	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0043	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0044	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0045	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0046	5202	1	0	0	0	0	1	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0047	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0048	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0049	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448