JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USH2A_chr1_215617891_216428448	0/0	a0050	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0051	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0052	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0053	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0054	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0055	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0056	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0057	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0058	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0059	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0060	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0061	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0062	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0063	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0064	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0065	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0066	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0067	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0068	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0069	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0070	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0071	5202	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	a0072	5202	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USHBP1_chr19_17244171_17269745	1/1	a0001	703	247	46	46	111	13	29	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0002	703	108	25	16	56	5	6	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0003	703	29	18	4	0	0	7	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0004	703	9	0	5	0	0	4	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0005	703	8	5	2	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0006	703	2	2	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0007	703	1	1	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0008	703	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0009	703	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0010	703	1	1	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0011	703	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0012	703	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0013	703	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0014	703	1	0	1	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	a0015	703	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USO1_chr4_75719577_75819286	1/1	a0001	962	277	80	65	78	14	38	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	a0002	962	4	0	0	0	0	4	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	a0003	962	2	0	0	2	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	a0004	962	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	a0005	962	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	a0006	962	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	a0007	962	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	a0008	962	1	0	1	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USP10_chr16_84695000_84784922	1/1	a0001	798	192	37	40	88	13	12	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	a0002	798	143	24	8	94	2	15	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	a0003	798	78	17	20	30	3	8	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	a0004	798	5	0	1	0	0	4	copy fasta	USP10	chr16	84695000	84784922