JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L15_chr4_9229385_9241046	0/0	a0009	6	3	0	1	1	1	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0010	530	3	0	0	2	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0011	65	3	0	2	0	1	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0012	530	3	0	1	2	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0013	530	2	1	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0014	145	2	1	0	0	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0015	530	2	0	0	2	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0016	530	2	1	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0017	145	2	2	0	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0018	530	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0019	530	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0020	530	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0021	530	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0022	530	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0023	530	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0024	530	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0025	530	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0026	530	1	0	0	0	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0027	530	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0028	530	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0029	530	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0030	530	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0031	530	1	0	0	0	1	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0032	530	1	0	0	0	1	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0033	156	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0034	530	1	0	0	0	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0035	530	1	1	0	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0036	530	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0037	530	1	0	0	0	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0038	530	1	1	0	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0039	530	1	1	0	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0040	530	1	1	0	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0041	530	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0042	530	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0043	530	1	0	0	0	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0044	530	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0045	530	1	1	0	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0046	530	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0047	530	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0048	553	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0049	530	1	1	0	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0050	530	1	0	0	1	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0051	413	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0052	530	1	0	1	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L17_chr4_9238879_9250471	0/0	a0001	530	16	1	6	5	1	3	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0002	530	14	1	2	6	1	4	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0003	530	14	4	5	3	1	1	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0004	530	14	0	0	8	2	4	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0005	530	12	3	2	6	1	0	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0006	145	10	0	2	6	2	0	copy fasta	USP17L17	chr4	9238879	9250471