JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L17_chr4_9238879_9250471	0/0	a0057	530	1	1	0	0	0	0	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0058	530	1	0	0	1	0	0	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0059	530	1	0	0	0	0	1	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0060	530	1	0	1	0	0	0	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0061	530	1	0	1	0	0	0	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0062	530	1	0	0	1	0	0	copy fasta	USP17L17	chr4	9238879	9250471
USP17L17_chr4_9238879_9250471	0/0	a0063	530	1	0	1	0	0	0	copy fasta	USP17L17	chr4	9238879	9250471
USP17L18_chr4_9243630_9255222	0/0	a0001	530	23	2	3	10	2	6	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0002	530	19	3	9	4	2	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0003	530	18	1	5	8	1	3	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0004	530	12	0	0	9	2	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0005	530	10	1	1	6	0	2	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0006	530	9	2	3	4	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0007	530	9	1	0	4	2	2	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0008	530	8	4	0	3	1	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0009	65	8	1	1	6	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0010	145	8	0	3	5	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0011	530	8	1	3	3	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0012	6	6	0	1	3	2	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0013	530	3	1	1	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0014	530	3	1	0	1	1	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0015	530	2	0	0	2	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0016	530	2	0	1	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0017	530	2	0	0	1	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0018	530	2	2	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0019	530	2	1	0	0	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0020	530	2	0	1	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0021	530	2	2	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0022	530	2	0	1	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0023	530	2	0	0	0	0	2	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0024	530	2	0	0	2	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0025	530	2	0	2	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0026	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0027	10	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0028	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0029	530	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0030	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0031	482	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0032	482	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0033	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0034	530	1	0	0	0	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0035	530	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0036	530	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0037	530	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0038	530	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0039	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0040	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0041	530	1	0	0	0	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0042	530	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0043	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222