JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L18_chr4_9243630_9255222	0/0	a0044	530	1	0	0	0	1	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0045	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0046	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0047	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0048	530	1	0	0	0	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0049	530	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0050	530	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0051	469	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0052	530	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0053	530	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0054	530	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0055	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0056	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0057	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0058	469	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0059	530	1	0	0	0	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0060	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0061	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0062	376	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0063	530	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0064	530	1	0	0	0	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0065	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0066	530	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0067	530	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0068	530	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	a0069	530	1	0	0	0	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L19_chr4_9248378_9259970	0/0	a0001	530	25	4	3	12	0	6	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0002	530	18	3	1	11	1	2	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0003	530	17	3	8	3	1	2	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0004	530	15	2	5	5	1	2	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0005	530	13	2	2	7	2	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0006	530	9	0	2	5	0	2	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0007	6	8	0	4	4	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0008	530	8	0	1	2	1	4	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0009	530	7	1	1	4	1	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0010	65	6	0	0	5	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0011	530	6	0	0	6	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0012	469	6	0	2	2	1	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0013	530	4	1	0	3	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0014	530	4	0	2	1	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0015	530	3	0	1	1	1	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0016	530	3	3	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0017	530	3	1	0	1	1	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0018	530	2	2	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0019	530	2	1	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0020	469	2	0	0	2	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0021	530	2	0	0	2	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0022	530	2	0	0	0	0	2	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0023	530	2	0	0	0	2	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0024	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970