JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L19_chr4_9248378_9259970	0/0	a0025	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0026	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0027	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0028	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0029	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0030	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0031	530	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0032	401	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0033	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0034	530	1	0	0	0	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0035	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0036	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0037	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0038	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0039	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0040	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0041	145	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0042	258	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0043	530	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0044	530	1	0	0	0	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0045	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0046	530	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0047	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0048	530	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0049	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0050	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0051	530	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0052	530	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0053	481	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0054	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0055	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0056	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0057	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0058	530	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0059	530	1	0	0	0	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0060	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0061	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	a0062	530	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L1_chr8_7327387_7338979	0/0	a0000	0	16	8	1	7	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	1/1	a0001	530	331	25	66	180	16	42	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0002	530	19	0	1	18	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0003	530	10	3	5	2	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0004	530	7	7	0	0	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0005	530	7	1	0	6	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0006	530	7	7	0	0	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0007	234	3	0	0	0	0	3	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0008	530	3	3	0	0	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0009	530	2	2	0	0	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0010	530	2	2	0	0	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0011	530	2	0	0	2	0	0	copy fasta	USP17L1	chr8	7327387	7338979