JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L1_chr8_7327387_7338979	0/0	a0012	530	1	0	0	1	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0013	530	1	0	0	0	0	1	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0014	530	1	0	1	0	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0015	530	1	1	0	0	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0016	530	1	0	0	1	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0017	530	1	0	0	1	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L1_chr8_7327387_7338979	0/0	a0018	530	1	1	0	0	0	0	copy fasta	USP17L1	chr8	7327387	7338979
USP17L20_chr4_9253124_9264716	0/0	a0001	530	34	4	4	21	1	4	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0002	530	19	4	10	3	0	2	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0003	530	19	2	5	7	2	3	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0004	65	17	2	1	6	1	7	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0005	530	12	1	5	4	1	1	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0006	51	10	0	2	6	0	2	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0007	530	10	0	5	5	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0008	530	8	2	1	3	2	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0009	530	7	0	2	3	1	1	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0010	530	6	0	1	5	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0011	401	4	4	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0012	530	4	0	0	4	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0013	530	3	3	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0014	530	3	0	1	2	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0015	6	2	0	0	2	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0016	530	2	0	0	1	1	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0017	530	2	0	0	2	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0018	530	2	2	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0019	530	2	1	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0020	530	2	1	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0021	530	2	0	0	2	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0022	469	2	1	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0023	258	2	0	0	0	0	2	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0024	530	2	0	0	2	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0025	530	2	0	0	1	0	1	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0026	530	2	0	0	2	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0027	327	2	0	2	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0028	530	2	0	0	2	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0029	530	2	0	0	2	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0030	65	2	0	0	2	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0031	530	2	0	0	1	0	1	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0032	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0033	10	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0034	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0035	34	1	0	1	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0036	298	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0037	530	1	0	0	0	1	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0038	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0039	530	1	0	0	0	0	1	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0040	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0041	530	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0042	530	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0043	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716