JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L20_chr4_9253124_9264716	0/0	a0044	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0045	530	1	0	0	0	0	1	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0046	530	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0047	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0048	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0049	530	1	0	1	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0050	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0051	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0052	530	1	0	1	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0053	530	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0054	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0055	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0056	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0057	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0058	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0059	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0060	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0061	530	1	0	0	0	0	1	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0062	530	1	0	0	0	0	1	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0063	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0064	530	1	0	0	0	0	1	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0065	530	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0066	530	1	0	0	0	0	1	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0067	530	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0068	530	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0069	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0070	13	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0071	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0072	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0073	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0074	530	1	0	0	1	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L20_chr4_9253124_9264716	0/0	a0075	56	1	1	0	0	0	0	copy fasta	USP17L20	chr4	9253124	9264716
USP17L21_chr4_9257872_9269464	0/0	a0001	530	23	0	3	14	0	6	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0002	530	14	2	8	2	0	2	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0003	530	13	5	2	4	0	2	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0004	530	9	1	4	4	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0005	530	6	1	1	2	0	2	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0006	530	6	0	0	5	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0007	530	6	0	1	5	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0008	51	5	0	0	3	0	2	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0009	530	4	0	0	4	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0010	530	4	1	1	1	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0011	530	4	0	2	2	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0012	530	3	0	1	1	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0013	530	3	2	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0014	530	3	0	0	2	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0015	530	3	0	0	1	1	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0016	530	2	0	0	0	1	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0017	530	2	0	1	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0018	65	2	1	0	0	1	0	copy fasta	USP17L21	chr4	9257872	9269464