JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BRD8_chr5_138134770_138183630	0/0	a0009	1235	1	0	0	1	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	a0010	1235	1	0	0	1	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	a0011	1235	1	0	0	1	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	a0012	1235	1	0	0	1	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD9_chr5_858741_897801	1/1	a0001	597	346	83	70	139	9	43	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	a0002	597	10	9	1	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	a0003	597	3	0	0	3	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	a0004	597	2	0	0	2	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	a0005	597	1	0	0	0	1	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	a0006	597	1	0	0	0	0	1	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	a0007	597	1	0	1	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRDT_chr1_91944401_92019421	0/1	a0001	947	157	39	32	60	8	17	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0002	947	86	17	13	49	0	7	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0003	947	33	4	8	7	3	11	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0004	947	20	12	5	1	1	1	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	1/0	a0005	947	10	9	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0006	947	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0007	947	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0008	947	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0009	947	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0010	947	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0011	947	1	0	1	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0012	217	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0013	947	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0014	947	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0015	947	1	0	1	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0016	947	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	a0017	947	1	0	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRF1_chr14_105204286_105306001	1/1	a0001	677	72	42	16	8	2	2	copy fasta	BRF1	chr14	105204286	105306001
BRF2_chr8_37838268_37854861	1/1	a0001	419	372	90	71	153	16	40	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	a0002	419	2	0	0	0	0	2	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	a0003	419	2	0	0	2	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	a0004	419	1	1	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	a0005	419	1	0	0	1	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	a0006	419	1	0	1	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	a0007	419	1	1	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRI3BP_chr12_124988645_125036231	1/1	a0001	251	203	63	43	66	10	19	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	a0002	252	186	30	41	95	2	18	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	a0003	253	15	1	0	9	2	3	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	a0004	252	6	0	0	6	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3_chr7_98276686_98296545	0/0	a0000	0	1	0	0	1	0	0	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	1/1	a0001	125	411	94	68	189	12	46	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	a0002	125	2	0	0	2	0	0	copy fasta	BRI3	chr7	98276686	98296545
BRICD5_chr16_2204253_2215863	0/1	a0001	228	235	35	38	120	13	28	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	1/0	a0002	228	144	39	25	62	2	15	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	a0003	228	33	10	19	0	3	1	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	a0004	228	10	9	1	0	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	a0005	228	4	4	0	0	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	a0006	228	1	0	0	1	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	a0007	228	1	0	0	0	0	1	copy fasta	BRICD5	chr16	2204253	2215863