JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L21_chr4_9257872_9269464	0/0	a0019	530	2	0	1	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0020	469	2	0	0	2	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0021	530	2	2	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0022	530	2	0	1	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0023	530	2	0	0	2	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0024	530	2	0	1	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0025	530	2	0	0	1	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0026	530	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0027	6	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0028	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0029	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0030	530	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0031	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0032	298	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0033	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0034	530	1	0	0	0	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0035	530	1	0	0	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0036	530	1	0	0	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0037	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0038	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0039	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0040	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0041	305	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0042	530	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0043	51	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0044	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0045	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0046	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0047	145	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0048	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0049	203	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0050	530	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0051	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0052	469	1	0	0	0	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0053	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0054	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0055	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0056	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0057	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0058	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0059	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0060	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0061	469	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0062	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0063	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0064	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0065	327	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0066	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0067	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0068	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464