JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L4_chr8_7332115_7343707	0/0	a0020	530	1	0	0	1	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0021	530	1	0	1	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0022	530	1	0	0	1	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0023	530	1	0	1	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0024	530	1	0	0	1	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0025	530	1	0	0	1	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0026	530	1	0	0	1	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0027	530	1	0	0	1	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0028	530	1	0	1	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L5_chr4_9334403_9345995	0/0	a0001	530	58	4	13	27	3	11	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0002	530	18	3	0	15	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0003	530	8	0	1	4	1	2	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0004	530	6	1	3	2	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0005	530	4	0	0	3	0	1	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0006	65	2	0	1	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0007	530	2	0	0	2	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0008	530	2	0	0	2	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0009	327	2	0	1	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0010	530	2	0	0	2	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0011	530	2	0	1	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0012	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0013	530	1	1	0	0	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0014	530	1	1	0	0	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0015	530	1	0	1	0	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0016	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0017	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0018	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0019	530	1	0	0	0	1	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0020	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0021	530	1	1	0	0	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0022	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0023	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0024	530	1	1	0	0	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0025	530	1	1	0	0	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0026	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0027	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0028	413	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0029	530	1	1	0	0	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0030	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0031	530	1	0	1	0	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0032	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0033	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0034	530	1	0	0	1	0	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L5_chr4_9334403_9345995	0/0	a0035	530	1	0	0	0	1	0	copy fasta	USP17L5	chr4	9334403	9345995
USP17L7_chr8_12127417_12139099	0/0	a0000	0	1	0	0	0	0	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/1	a0001	530	61	1	6	51	1	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0002	530	50	3	13	27	2	5	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	1/0	a0003	530	18	3	5	6	0	3	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0004	530	18	1	7	9	1	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0005	530	12	8	0	2	0	2	copy fasta	USP17L7	chr8	12127417	12139099