JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP20_chr9_129830458_129886828	1/0	a0002	914	32	22	5	0	1	3	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0003	914	4	0	0	3	0	1	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0004	913	3	1	0	0	0	2	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0005	913	3	3	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0006	913	2	2	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0007	913	1	0	1	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0008	913	1	0	0	0	0	1	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0009	914	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0010	914	1	0	1	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0011	913	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0012	913	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0013	913	1	0	1	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	a0014	913	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP21_chr1_161154500_161170723	1/1	a0001	565	364	75	61	176	17	33	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	a0002	565	2	0	0	2	0	0	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	a0003	565	2	0	2	0	0	0	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	a0004	565	2	1	1	0	0	0	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	a0005	565	1	0	0	0	0	1	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	a0006	565	1	0	0	0	1	0	copy fasta	USP21	chr1	161154500	161170723
USP22_chr17_20994596_21048011	1/1	a0001	525	354	90	72	143	12	35	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	a0002	525	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	a0003	525	1	0	0	0	0	1	copy fasta	USP22	chr17	20994596	21048011
USP24_chr1_55061359_55220364	0/1	a0001	2620	81	16	18	33	4	9	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	a0002	2620	61	37	6	15	0	3	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	1/0	a0003	2620	24	9	8	2	2	2	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	a0004	2620	19	10	1	7	1	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	a0005	2621	5	5	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	a0006	2621	2	0	1	0	1	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	a0007	2620	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	a0008	2620	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	a0009	2620	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	a0010	2620	1	0	0	1	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	a0011	2620	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	a0012	2620	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP25_chr21_15724982_15885064	1/1	a0001	1125	191	67	23	76	6	17	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	a0002	1125	4	3	1	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	a0003	1125	2	2	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	a0004	1125	2	2	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	a0005	1125	1	0	0	0	0	1	copy fasta	USP25	chr21	15724982	15885064
USP26_chrX_133018168_133102109	1/1	a0001	913	213	47	34	96	9	25	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	a0002	914	37	9	0	25	0	3	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	a0003	913	2	0	0	0	2	0	copy fasta	USP26	chrX	133018168	133102109
USP27X_chrX_49874484_49887558	1/1	a0001	438	269	63	52	119	5	28	copy fasta	USP27X	chrX	49874484	49887558
USP28_chr11_113792875_113880572	1/1	a0001	1139	356	85	63	163	10	33	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	a0002	1139	2	0	0	2	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	a0003	1139	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	a0004	1139	1	0	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	a0005	1139	1	0	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	a0006	1139	1	0	0	0	0	1	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	a0007	1139	1	0	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572