JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP28_chr11_113792875_113880572	0/0	a0008	1139	1	0	0	1	0	0	copy fasta	USP28	chr11	113792875	113880572
USP29_chr19_57114985_57136926	0/0	a0001	912	216	55	39	86	11	25	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0002	912	102	6	13	82	0	1	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/1	a0003	912	66	20	12	18	2	13	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	1/0	a0004	922	8	1	4	0	2	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0005	912	3	0	0	3	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0006	912	3	3	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0007	912	3	3	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0008	912	2	1	1	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0009	912	2	2	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0010	912	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0011	912	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0012	912	1	0	1	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0013	912	1	1	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0014	912	1	1	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0015	912	1	0	0	0	0	1	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0016	912	1	1	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0017	912	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0018	922	1	0	0	0	1	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0019	912	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	a0020	912	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP2_chr11_119350215_119386690	1/1	a0001	605	195	65	36	52	14	26	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	a0002	605	2	0	0	2	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	a0003	605	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	a0004	605	1	0	1	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	a0005	605	1	0	1	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	a0006	605	1	0	0	1	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	a0007	605	1	0	0	1	0	0	copy fasta	USP2	chr11	119350215	119386690
USP30_chr12_109047576_109093023	1/1	a0001	517	344	82	57	154	14	35	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	a0002	517	39	4	0	29	4	2	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	a0003	517	5	5	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	a0004	517	3	0	0	3	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	a0005	517	2	2	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	a0006	517	2	0	1	0	0	1	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	a0007	517	1	1	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP31_chr16_23056406_23154452	1/0	a0001	1352	124	51	23	32	2	15	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0002	1352	58	6	19	25	4	4	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/1	a0003	1352	34	11	10	5	3	4	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0004	1352	6	3	0	3	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0005	1354	5	5	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0006	1352	4	0	0	4	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0007	1352	3	0	0	1	1	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0008	1352	3	3	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0009	1352	2	2	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0010	1352	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0011	1352	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0012	1352	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0013	1352	1	0	0	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	a0014	1352	1	0	0	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP32_chr17_60172327_60397133	1/1	a0001	1604	147	71	30	38	0	6	copy fasta	USP32	chr17	60172327	60397133