JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BRICD5_chr16_2204253_2215863	0/0	a0008	228	1	0	1	0	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	a0009	228	1	1	0	0	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	a0010	228	1	0	0	0	0	1	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	a0011	228	1	0	0	1	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	a0012	228	1	0	0	1	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	a0013	228	1	0	0	1	0	0	copy fasta	BRICD5	chr16	2204253	2215863
BRINP1_chr9_119161629_119374435	1/1	a0001	761	231	78	57	56	12	26	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	a0002	761	2	0	2	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	a0003	761	2	0	0	2	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	a0004	761	1	0	1	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP2_chr1_177165958_177287422	1/0	a0001	783	174	40	40	68	5	20	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/1	a0002	783	74	24	10	33	2	4	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	a0003	783	1	0	0	0	1	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	a0004	783	1	0	0	1	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	a0005	783	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	a0006	783	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP3_chr1_190092658_190482864	1/1	a0001	766	237	78	36	85	6	30	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	a0002	766	1	1	0	0	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	a0003	766	1	0	0	1	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	a0004	766	1	1	0	0	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRIP1_chr17_61674139_61868528	0/1	a0001	1249	156	40	31	62	5	17	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	1/0	a0002	1249	99	26	13	35	3	21	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	a0003	1249	2	0	0	2	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	a0004	1249	2	0	0	2	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	a0005	1249	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	a0006	1249	1	0	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	a0007	1249	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	a0008	1249	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	a0009	1249	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	a0010	1249	1	0	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	a0011	1249	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIX1_chr5_34910711_34930996	1/1	a0001	353	436	94	82	196	18	44	copy fasta	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	a0002	353	2	0	0	2	0	0	copy fasta	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	a0003	353	1	0	0	1	0	0	copy fasta	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	a0004	353	1	0	0	1	0	0	copy fasta	BRIX1	chr5	34910711	34930996
BRK1_chr3_10110675_10132190	1/1	a0001	75	356	94	72	132	14	42	copy fasta	BRK1	chr3	10110675	10132190
BRME1_chr19_13877348_13911117	0/0	a0001	668	165	18	31	77	10	29	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0002	668	120	46	12	49	4	9	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0003	668	6	0	3	0	3	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0004	668	6	6	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0005	668	4	4	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0006	668	3	3	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0007	668	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0008	668	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0009	668	2	0	1	0	0	1	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0010	668	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0011	668	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0012	668	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0013	668	1	0	1	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0014	668	1	0	0	0	0	1	copy fasta	BRME1	chr19	13877348	13911117