JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP32_chr17_60172327_60397133	0/0	a0002	1604	2	1	1	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	a0003	1604	1	0	1	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	a0004	1604	1	0	0	1	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	a0005	1604	1	0	0	1	0	0	copy fasta	USP32	chr17	60172327	60397133
USP33_chr1_77690987_77764852	1/1	a0001	911	306	88	46	132	8	30	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	a0002	911	5	0	0	5	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	a0003	911	3	0	0	3	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	a0004	911	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	a0005	911	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	a0006	911	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	a0007	911	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP34_chr2_61182463_61476087	0/1	a0001	3546	296	73	47	135	10	30	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	a0002	3546	5	5	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	a0003	3546	4	0	2	0	2	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	1/0	a0004	3546	2	0	1	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	a0005	3546	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	a0006	3546	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	a0007	3546	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	a0008	3546	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	a0009	3546	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP35_chr11_78183919_78220232	0/0	a0001	1018	156	37	40	51	9	19	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0002	1018	111	5	25	69	1	11	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	1/0	a0003	1018	72	0	4	53	0	14	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/1	a0004	1018	29	17	2	5	3	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0005	1018	8	8	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0006	1018	7	7	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0007	1018	7	7	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0008	1017	4	4	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0009	1018	3	2	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0010	1018	3	2	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0011	1018	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0012	1018	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0013	1018	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0014	1018	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0015	1018	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0016	1018	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0017	1018	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0018	1018	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0019	1018	1	0	0	0	1	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0020	1018	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0021	1018	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0022	1018	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0023	1018	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0024	1018	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0025	1018	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	a0026	1018	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP36_chr17_78790652_78845814	1/0	a0001	1123	91	17	20	43	2	8	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0002	1121	82	3	19	45	4	11	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/1	a0003	1123	49	4	11	22	2	9	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0004	1123	23	20	1	0	0	2	copy fasta	USP36	chr17	78790652	78845814