JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP36_chr17_78790652_78845814	0/0	a0005	1123	18	1	0	17	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0006	1121	17	1	5	3	4	4	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0007	1123	17	0	0	10	0	7	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0008	1123	15	13	1	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0009	1123	10	6	3	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0010	1123	10	0	0	10	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0011	1123	6	6	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0012	1123	5	5	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0013	1121	5	0	0	5	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0014	1123	4	4	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0015	1123	3	3	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0016	1123	3	3	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0017	1123	2	0	1	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0018	1121	2	0	0	2	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0019	1123	2	0	0	2	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0020	1121	2	0	2	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0021	1123	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0022	1123	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0023	1121	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0024	1123	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0025	1123	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0026	927	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0027	1123	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0028	1121	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0029	1123	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0030	1123	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0031	1123	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0032	1121	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0033	1123	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0034	1123	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0035	1123	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0036	1123	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0037	1123	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0038	1123	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0039	1123	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	a0040	1123	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP37_chr2_218445251_218573351	0/1	a0001	979	264	84	40	100	11	28	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	a0002	979	8	0	0	8	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	a0003	979	2	2	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	a0004	979	2	0	0	2	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	1/0	a0005	979	2	1	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	a0006	979	2	2	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	a0007	979	1	0	0	0	1	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	a0008	979	1	1	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP38_chr4_143179917_143228874	1/1	a0001	1042	247	89	49	66	8	33	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	a0002	1042	5	4	1	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	a0003	1042	3	0	0	3	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	a0004	1042	1	0	0	1	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	a0005	1042	1	0	0	0	0	1	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	a0006	1042	1	1	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874