JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP39_chr2_85611186_85654283	1/1	a0001	565	342	85	64	143	9	39	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	a0002	565	6	1	3	0	1	1	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	a0003	565	1	0	1	0	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	a0004	565	1	0	0	1	0	0	copy fasta	USP39	chr2	85611186	85654283
USP3_chr15_63499593_63599633	1/1	a0001	520	216	74	54	44	14	28	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	a0002	520	17	11	6	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	a0003	520	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP40_chr2_233470526_233571782	1/1	a0001	1236	146	19	29	76	9	11	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0002	1236	61	31	9	16	0	5	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0003	1236	36	0	10	22	3	1	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0004	1237	33	14	4	7	6	2	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0005	1236	10	0	0	10	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0006	1236	9	9	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0007	1236	7	7	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0008	1236	3	3	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0009	1237	2	2	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0010	1236	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0011	1236	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0012	1236	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0013	1237	1	0	1	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0014	1237	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0015	1236	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0016	886	1	0	0	0	0	1	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0017	1236	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0018	1236	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0019	1236	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0020	1236	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0021	1236	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0022	1236	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0023	1236	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0024	1236	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0025	1236	1	0	1	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	a0026	48	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP42_chr7_6099949_6166564	1/0	a0001	1316	123	13	35	44	8	22	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0002	1316	117	34	14	62	2	5	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0003	1316	94	20	10	56	0	8	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0004	1316	23	5	11	1	1	5	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0005	1316	8	7	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0006	1316	2	2	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0007	1316	2	0	0	1	0	1	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0008	1316	2	0	2	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0009	1316	2	2	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0010	1316	2	0	0	2	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0011	1316	2	0	1	0	1	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0012	1316	2	2	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0013	1316	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0014	1316	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0015	1316	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0016	1316	1	0	0	1	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0017	1316	1	0	0	1	0	0	copy fasta	USP42	chr7	6099949	6166564