JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP42_chr7_6099949_6166564	0/0	a0018	1316	1	0	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0019	1316	1	0	0	0	0	1	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0020	1316	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0021	1316	1	0	0	0	1	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0022	1316	1	0	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0023	1316	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0024	1316	1	0	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0025	1316	1	0	0	0	1	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/1	a0026	1316	1	0	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	a0027	1316	1	0	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP43_chr17_9640517_9734687	1/1	a0001	1123	308	92	43	132	8	31	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	a0002	1123	12	0	1	11	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	a0003	1123	8	6	0	2	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	a0004	1123	1	0	0	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	a0005	1123	1	0	0	0	0	1	copy fasta	USP43	chr17	9640517	9734687
USP44_chr12_95511560_95556476	0/1	a0001	712	265	61	44	117	12	30	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	1/0	a0002	712	113	13	26	57	4	12	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	a0003	712	13	13	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	a0004	712	5	0	0	5	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	a0005	712	2	1	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	a0006	712	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	a0007	712	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	a0008	712	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	a0009	712	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP45_chr6_99427325_99520423	0/1	a0001	814	182	49	33	74	7	18	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0002	814	114	6	29	64	5	10	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0003	814	77	11	21	27	3	15	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0004	814	6	5	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	1/0	a0005	814	6	4	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0006	814	5	5	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0007	814	4	0	1	2	1	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0008	814	3	0	0	3	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0009	814	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0010	814	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0011	814	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0012	814	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0013	442	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0014	545	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0015	814	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0016	814	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	a0017	814	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP46_chr4_52585960_52664301	1/1	a0001	366	192	80	26	66	14	4	copy fasta	USP46	chr4	52585960	52664301
USP47_chr11_11836972_11966887	0/0	a0001	1355	315	91	50	132	11	31	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	1/1	a0002	1355	60	1	17	22	4	14	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	a0003	1355	5	0	0	5	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	a0004	1355	3	0	0	3	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	a0005	1355	2	0	1	0	1	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	a0006	1355	1	0	0	0	0	1	copy fasta	USP47	chr11	11836972	11966887
USP48_chr1_21673298_21788149	1/1	a0001	1035	361	89	68	143	14	45	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	a0002	1035	2	0	0	1	0	1	copy fasta	USP48	chr1	21673298	21788149