JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP54_chr10_73492538_73596342	0/0	a0003	1684	2	0	1	0	0	1	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	a0004	1684	1	0	0	1	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	a0005	1684	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	a0006	1684	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	a0007	1684	1	0	0	1	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	a0008	1684	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	a0009	1684	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	a0010	1684	1	0	1	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	a0011	1684	1	0	0	1	0	0	copy fasta	USP54	chr10	73492538	73596342
USP5_chr12_6847150_6871632	1/1	a0001	858	384	87	64	172	16	43	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	a0002	858	3	0	3	0	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	a0003	858	1	0	1	0	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	a0004	858	1	0	0	0	0	1	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	a0005	858	1	1	0	0	0	0	copy fasta	USP5	chr12	6847150	6871632
USP6NL_chr10_11455510_11616650	1/1	a0001	828	395	82	78	181	14	38	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	a0002	828	3	0	1	0	2	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	a0003	828	1	0	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	a0004	828	1	0	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	a0005	828	1	0	1	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	a0006	828	1	0	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6_chr17_5111032_5179991	0/0	a0001	1406	140	38	19	68	2	13	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0002	1406	68	13	28	12	4	11	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0003	1406	50	12	3	32	1	2	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/1	a0004	1406	33	6	9	10	3	4	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0005	1406	31	3	4	22	0	2	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0006	1406	5	0	0	5	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0007	1406	4	4	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0008	1406	4	0	0	4	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0009	1406	4	0	2	0	2	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0010	1406	3	3	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0011	1406	2	2	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0012	1406	2	0	2	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0013	1406	2	1	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0014	1406	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0015	1406	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0016	1406	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0017	1406	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0018	1406	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0019	1406	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0020	1406	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0021	1406	1	0	0	0	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0022	1406	1	0	0	0	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0023	1188	1	0	1	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	1/0	a0024	1406	1	0	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0025	1406	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0026	1406	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	a0027	1406	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP7_chr16_8887097_8968906	1/1	a0001	1102	336	90	62	139	8	35	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	a0002	1102	1	0	0	1	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	a0003	1102	1	0	0	0	0	1	copy fasta	USP7	chr16	8887097	8968906