JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP8_chr15_50419405_50519421	1/1	a0001	1118	318	81	48	148	10	29	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	a0002	1118	32	2	0	26	1	3	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	a0003	1118	21	2	12	0	0	7	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	a0004	1118	2	0	1	0	1	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	a0005	1118	2	0	2	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	a0006	1118	2	2	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	a0007	1118	1	0	0	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	a0008	1118	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	a0009	1118	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	a0010	1118	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	a0011	1118	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP9X_chrX_41080445_41241579	1/1	a0001	2554	285	66	54	126	9	28	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	a0002	2554	2	2	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	a0003	1369	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	a0004	1629	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	a0005	2554	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	a0006	397	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	a0007	2554	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	a0008	36	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9Y_chrY_12696231_12865839	1/1	a0001	2555	81	1	15	42	5	16	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	a0002	2555	26	16	3	7	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	a0003	2555	20	0	0	20	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	a0004	2555	1	1	0	0	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	a0005	2555	1	0	0	1	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	a0006	2555	1	0	1	0	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	a0007	2555	1	0	1	0	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USPL1_chr13_30612920_30665766	1/0	a0001	1092	135	13	29	73	7	12	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/1	a0002	1092	105	44	19	20	5	16	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0003	1092	27	0	3	18	2	4	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0004	1092	17	14	3	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0005	1092	6	6	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0006	1092	4	2	1	0	0	1	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0007	1092	2	2	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0008	1092	2	0	0	2	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0009	1092	2	2	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0010	1092	2	0	0	0	0	2	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0011	1092	1	1	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0012	1092	1	0	1	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0013	1092	1	0	0	1	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	a0014	1092	1	0	0	0	0	1	copy fasta	USPL1	chr13	30612920	30665766
UST_chr6_148742030_149081990	1/1	a0001	406	189	68	29	61	4	25	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	a0002	406	19	9	3	6	0	1	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	a0003	406	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	a0004	406	1	0	0	1	0	0	copy fasta	UST	chr6	148742030	149081990
UTF1_chr10_133225217_133236558	0/0	a0000	0	11	1	1	6	0	3	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	1/0	a0001	341	336	73	67	145	15	35	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/1	a0002	341	36	1	9	14	1	10	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	a0003	341	17	16	1	0	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	a0004	341	1	0	0	1	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	a0005	341	1	1	0	0	0	0	copy fasta	UTF1	chr10	133225217	133236558