JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UTF1_chr10_133225217_133236558	0/0	a0006	341	1	0	0	0	0	1	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	a0007	341	1	0	0	0	0	1	copy fasta	UTF1	chr10	133225217	133236558
UTP11_chr1_38007734_38029820	1/1	a0001	253	368	90	60	158	16	42	copy fasta	UTP11	chr1	38007734	38029820
UTP14A_chrX_129901164_129934752	1/1	a0001	771	204	65	36	71	7	23	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0002	771	51	2	5	35	3	6	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0003	771	3	3	0	0	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0004	771	2	1	1	0	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0005	513	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0006	666	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0007	771	1	1	0	0	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0008	666	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0009	588	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0010	771	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0011	513	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0012	420	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0013	771	1	0	0	0	1	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0014	359	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0015	193	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0016	771	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	a0017	771	1	0	0	0	0	1	copy fasta	UTP14A	chrX	129901164	129934752
UTP14C_chr13_52019691_52038600	0/0	a0001	766	183	34	39	86	7	17	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	1/1	a0002	766	160	39	22	76	2	19	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	a0003	766	37	4	15	11	4	3	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	a0004	766	7	2	2	0	1	2	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	a0005	766	1	0	0	0	0	1	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	a0006	766	1	0	0	1	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	a0007	766	1	0	0	1	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	a0008	766	1	1	0	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	a0009	766	1	0	0	1	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP15_chr5_73560743_73588380	1/1	a0001	518	343	72	73	140	16	40	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	a0002	518	16	14	2	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	a0003	518	3	3	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	a0004	518	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	a0005	518	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	a0006	518	1	0	1	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	a0007	518	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP18_chr17_51255546_51302933	1/1	a0001	556	358	93	75	132	14	42	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	a0002	556	2	0	0	2	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	a0003	556	2	0	0	2	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	a0004	556	1	0	0	0	0	1	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	a0005	556	1	0	1	0	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	a0006	556	1	0	0	0	0	1	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	a0007	556	1	1	0	0	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP20_chr12_101275105_101391618	0/0	a0001	2785	255	61	47	112	9	26	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0002	2785	26	2	9	4	4	7	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/1	a0003	2785	18	0	1	15	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0004	2785	7	7	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0005	2785	5	2	0	0	1	2	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0006	2785	4	4	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0007	2785	4	2	2	0	0	0	copy fasta	UTP20	chr12	101275105	101391618