JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UTP20_chr12_101275105_101391618	0/0	a0008	2785	3	0	0	3	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	1/0	a0009	2785	3	0	1	0	1	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0010	2785	3	0	0	3	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0011	2785	2	0	1	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0012	2785	2	0	2	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0013	2785	2	2	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0014	2785	2	1	1	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0015	2785	2	0	1	0	1	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0016	2785	2	0	0	0	0	2	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0017	2785	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0018	2785	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0019	2785	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0020	2785	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0021	2785	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0022	2785	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0023	2785	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0024	2785	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0025	2785	1	0	1	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0026	2785	1	1	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0027	2785	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0028	2785	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0029	2785	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0030	2785	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0031	2785	1	1	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	a0032	2785	1	1	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP23_chr8_116761524_116779684	1/1	a0001	249	318	45	68	163	14	26	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	a0002	249	25	16	0	2	1	6	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	a0003	249	21	13	3	0	1	4	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	a0004	248	15	14	1	0	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	a0005	249	4	4	0	0	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	a0006	249	1	0	0	1	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP25_chr1_209822972_209862565	0/0	a0001	756	183	42	31	76	9	25	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	1/1	a0002	756	178	29	29	104	5	9	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0003	756	48	6	9	23	4	6	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0004	756	3	0	2	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0005	756	3	2	1	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0006	756	3	0	0	3	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0007	756	2	2	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0008	756	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0009	756	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0010	756	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0011	756	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0012	756	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0013	756	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0014	756	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0015	756	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0016	756	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	a0017	756	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP3_chr4_70683532_70695551	1/1	a0001	479	350	83	72	137	16	40	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	a0002	479	4	4	0	0	0	0	copy fasta	UTP3	chr4	70683532	70695551