JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UTP3_chr4_70683532_70695551	0/0	a0003	479	4	4	0	0	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	a0004	479	3	3	0	0	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	a0005	479	1	0	0	1	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP4_chr16_69127649_69174021	1/1	a0001	686	283	92	55	85	14	35	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	a0002	686	4	0	1	1	0	2	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	a0003	686	2	0	2	0	0	0	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	a0004	686	1	0	0	0	0	1	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	a0005	686	1	1	0	0	0	0	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	a0006	686	1	1	0	0	0	0	copy fasta	UTP4	chr16	69127649	69174021
UTP6_chr17_31855904_31906708	1/1	a0001	597	222	87	40	61	7	25	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	a0002	597	89	5	15	54	5	10	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	a0003	597	3	3	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	a0004	597	2	0	0	2	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	a0005	597	2	0	0	2	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	a0006	597	1	0	0	0	0	1	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	a0007	597	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	a0008	578	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	a0009	597	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	a0010	597	1	0	1	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	a0011	597	1	1	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTRN_chr6_144280335_144858034	1/1	a0001	3433	75	37	17	14	2	3	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0002	3433	23	11	1	9	0	2	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0003	3433	11	1	4	2	0	4	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0004	3433	4	2	2	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0005	3433	2	2	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0006	3433	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0007	3433	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0008	3433	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0009	3433	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0010	3433	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0011	3433	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0012	3433	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0013	3433	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0014	3433	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0015	3433	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0016	3433	1	0	0	0	0	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0017	3433	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	a0018	3433	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTS2B_chr3_191262168_191335526	0/1	a0001	119	207	18	45	114	7	22	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	1/0	a0002	119	184	68	25	67	5	18	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	a0003	110	3	3	0	0	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	a0004	119	2	0	0	2	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	a0005	119	2	2	0	0	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	a0006	119	2	0	0	2	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	a0007	27	1	1	0	0	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	a0008	119	1	0	0	1	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2R_chr17_82366765_82382458	1/1	a0001	389	371	85	71	155	16	42	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	a0002	389	6	5	1	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	a0003	389	2	2	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	a0004	389	1	0	0	1	0	0	copy fasta	UTS2R	chr17	82366765	82382458