JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BRME1_chr19_13877348_13911117	0/0	a0015	668	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0016	668	1	1	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0017	668	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0018	668	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	a0019	668	1	0	0	0	1	0	copy fasta	BRME1	chr19	13877348	13911117
BRMS1L_chr14_35821338_35876963	1/1	a0001	323	373	92	46	177	8	48	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1L_chr14_35821338_35876963	0/0	a0002	323	1	0	0	1	0	0	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1_chr11_66332339_66350104	1/1	a0001	246	422	90	72	198	18	42	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	a0002	246	1	1	0	0	0	0	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	a0003	246	1	1	0	0	0	0	copy fasta	BRMS1	chr11	66332339	66350104
BROX_chr1_222707564_222740187	1/1	a0001	411	379	91	60	169	14	43	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	a0002	411	5	5	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	a0003	197	1	0	0	0	0	1	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	a0004	411	1	0	0	1	0	0	copy fasta	BROX	chr1	222707564	222740187
BRPF1_chr3_9726735_9753015	1/1	a0001	1220	421	88	79	188	18	46	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	a0002	1220	1	0	1	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	a0003	1220	1	0	0	1	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	a0004	1220	1	1	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	a0005	1220	1	0	0	1	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	a0006	1220	1	1	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF3_chr6_36191744_36237790	1/1	a0001	1205	325	86	56	150	6	25	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	a0002	1205	6	0	1	0	2	3	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	a0003	1205	2	0	2	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	a0004	1205	1	0	0	0	0	1	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	a0005	1205	1	0	0	0	0	1	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	a0006	1205	1	0	1	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRS3_chrX_136482947_136498780	1/1	a0001	399	279	66	51	125	7	28	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	a0002	399	1	0	0	1	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRSK1_chr19_55278997_55317562	1/0	a0001	778	322	89	65	117	8	42	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/1	a0002	778	12	7	4	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	a0003	458	1	0	1	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	a0004	778	1	0	0	0	1	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	a0005	778	1	0	0	0	1	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	a0006	778	1	0	0	1	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK2_chr11_1384934_1467689	0/1	a0001	736	210	62	43	69	13	22	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	1/0	a0002	736	145	30	28	64	3	19	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	a0003	736	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	a0004	736	1	0	0	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	a0005	736	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	a0006	736	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	a0007	625	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRWD1_chr21_39180482_39318632	0/0	a0001	2269	142	27	31	63	6	15	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	1/0	a0002	2269	67	0	9	47	1	9	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/1	a0003	2269	62	26	17	10	3	5	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0004	2269	49	19	5	17	0	8	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0005	2269	4	4	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0006	2269	4	4	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0007	2269	1	0	0	1	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0008	2269	1	1	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0009	2269	1	1	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632