JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UTS2R_chr17_82366765_82382458	0/0	a0005	389	1	1	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	a0006	389	1	1	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	a0007	389	1	0	0	0	0	1	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	a0008	389	1	0	0	0	0	1	copy fasta	UTS2R	chr17	82366765	82382458
UTS2_chr1_7842612_7858065	1/0	a0001	124	366	88	54	168	11	44	copy fasta	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	a0002	124	78	4	18	54	0	2	copy fasta	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/1	a0003	124	23	4	4	9	5	0	copy fasta	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	a0004	124	1	0	0	1	0	0	copy fasta	UTS2	chr1	7842612	7858065
UTY_chrY_13243385_13485033	1/1	a0001	1444	122	18	19	62	5	16	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	a0002	175	1	0	0	1	0	0	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	a0003	1067	1	0	0	1	0	0	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	a0004	251	1	0	0	1	0	0	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	a0005	1444	1	0	0	1	0	0	copy fasta	UTY	chrY	13243385	13485033
UVRAG_chr11_75810210_76149232	1/1	a0001	699	91	40	9	23	1	16	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	a0002	699	48	24	4	13	1	6	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	a0003	699	3	2	0	1	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	a0004	699	1	0	0	1	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	a0005	699	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	a0006	699	1	0	1	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	a0007	699	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVSSA_chr4_1342208_1393049	0/0	a0001	709	175	45	43	58	8	21	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0002	709	93	11	15	56	0	11	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	1/1	a0003	709	90	14	20	39	6	9	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0004	709	11	11	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0005	709	4	0	0	4	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0006	709	3	3	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0007	709	3	0	0	1	0	2	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0008	709	3	3	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0009	709	2	1	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0010	709	2	0	0	2	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0011	709	2	0	0	2	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0012	709	2	0	0	0	0	2	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0013	709	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0014	709	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0015	709	1	0	0	0	0	1	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0016	709	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0017	709	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0018	709	1	0	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0019	709	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0020	709	1	0	0	0	1	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0021	709	1	0	0	0	1	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	a0022	709	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UXS1_chr2_106088311_106199301	1/1	a0001	425	304	70	56	128	12	36	copy fasta	UXS1	chr2	106088311	106199301
UXT_chrX_47646796_47664180	0/0	a0000	0	1	0	0	1	0	0	copy fasta	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	1/1	a0001	157	287	78	47	127	11	22	copy fasta	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	a0002	138	1	0	0	1	0	0	copy fasta	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	a0003	128	1	0	0	1	0	0	copy fasta	UXT	chrX	47646796	47664180
VAC14_chr16_70682439_70806158	1/1	a0001	782	319	77	66	126	16	32	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	a0002	782	3	3	0	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAMP1_chr12_6457237_6475677	1/1	a0001	118	446	92	86	200	18	48	copy fasta	VAMP1	chr12	6457237	6475677