JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VAV2_chr9_133756894_133997324	0/0	a0005	878	1	0	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	a0006	878	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV3_chr1_107566161_107970180	0/1	a0001	847	86	39	18	16	4	8	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	1/0	a0002	847	80	17	23	23	2	14	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0003	847	23	0	4	13	1	5	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0004	847	10	0	1	7	1	1	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0005	847	3	3	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0006	847	1	0	0	1	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0007	847	1	0	0	1	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0008	842	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0009	847	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0010	847	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0011	847	1	0	0	1	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0012	847	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	a0013	847	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAX1_chr10_117128290_117143270	1/1	a0001	334	444	83	81	212	18	48	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	a0002	334	8	8	0	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	a0003	337	3	3	0	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	a0004	334	1	0	1	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX2_chr2_70895576_70938446	1/1	a0001	290	347	69	72	161	10	33	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	a0002	290	71	21	5	36	0	9	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	a0003	290	6	5	1	0	0	0	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	a0004	290	1	0	0	1	0	0	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	a0005	290	1	1	0	0	0	0	copy fasta	VAX2	chr2	70895576	70938446
VBP1_chrX_155211460_155244841	1/1	a0001	197	247	66	44	98	7	30	copy fasta	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	a0002	197	1	0	1	0	0	0	copy fasta	VBP1	chrX	155211460	155244841
VCAM1_chr1_100714742_100744045	1/1	a0001	739	416	74	77	200	16	47	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0002	739	11	11	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0003	739	6	5	1	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0004	739	2	2	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0005	739	2	2	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0006	739	2	0	2	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0007	739	1	0	0	1	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0008	739	1	1	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0009	443	1	0	0	1	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0010	739	1	1	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0011	739	1	0	0	1	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0012	739	1	0	0	0	0	1	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	a0013	739	1	0	0	1	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAN_chr5_83466744_83587302	0/0	a0001	3396	98	20	21	40	7	10	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	1/1	a0002	3396	64	7	14	28	3	10	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0003	3396	37	6	0	23	0	8	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0004	3396	29	0	0	28	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0005	3396	20	7	2	10	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0006	3396	11	10	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0007	3396	11	9	2	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0008	3396	10	5	3	0	2	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0009	3396	6	0	0	4	0	2	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0010	3396	6	0	3	0	2	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0011	3396	6	0	0	6	0	0	copy fasta	VCAN	chr5	83466744	83587302