JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VCAN_chr5_83466744_83587302	0/0	a0012	3396	5	3	2	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0013	3396	4	3	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0014	3396	4	4	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0015	3396	3	0	0	3	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0016	3396	2	0	0	1	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0017	3396	2	0	0	2	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0018	3396	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0019	3396	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0020	3396	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0021	3396	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0022	3396	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0023	3396	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0024	3396	1	0	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0025	3396	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0026	3396	1	0	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0027	3070	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0028	3396	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0029	3396	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0030	3396	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0031	3396	1	0	0	0	1	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0032	3396	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0033	3396	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0034	3396	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0035	3396	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0036	3396	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0037	3396	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0038	3396	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0039	3396	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0040	3396	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0041	3396	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0042	3396	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0043	3396	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0044	3396	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0045	3396	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	a0046	3396	1	0	0	0	1	0	copy fasta	VCAN	chr5	83466744	83587302
VCL_chr10_73993116_74125169	1/1	a0001	1134	245	72	57	82	9	23	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	a0002	1134	10	0	2	7	1	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	a0003	1134	4	0	0	4	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	a0004	1134	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	a0005	1134	1	0	0	1	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	a0006	1134	1	0	1	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	a0007	1134	1	0	0	0	0	1	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	a0008	1134	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCPIP1_chr8_66623487_66672231	1/1	a0001	1222	248	77	48	72	13	36	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	a0002	1222	5	3	2	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	a0003	1222	1	0	0	0	0	1	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	a0004	1222	1	0	0	1	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	a0005	1222	1	0	0	1	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	a0006	1222	1	0	0	0	0	1	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	a0007	1222	1	0	0	0	1	0	copy fasta	VCPIP1	chr8	66623487	66672231