JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VCPKMT_chr14_50103637_50121572	1/1	a0001	229	291	69	58	112	12	38	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	a0002	229	152	24	22	96	2	8	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	a0003	229	4	0	0	4	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	a0004	125	3	0	0	3	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	a0005	229	1	1	0	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	a0006	225	1	0	0	1	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCP_chr9_35051064_35077625	1/1	a0001	806	411	90	74	188	12	45	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	a0002	806	2	2	0	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	a0003	806	1	0	0	0	0	1	copy fasta	VCP	chr9	35051064	35077625
VCX2_chrX_8164944_8176267	0/0	a0001	139	24	1	3	11	2	7	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0002	139	22	10	1	11	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0003	139	17	6	1	9	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	1/0	a0004	139	11	1	6	1	1	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0005	139	8	1	4	0	0	3	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0006	139	7	7	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0007	159	3	2	0	0	1	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0008	139	2	2	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0009	139	2	2	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0010	139	2	1	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0011	139	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0012	139	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0013	159	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0014	114	1	0	1	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0015	139	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0016	61	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0017	61	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0018	139	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0019	103	1	0	1	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0020	114	1	0	0	0	1	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0021	113	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0022	139	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0023	61	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0024	139	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0025	61	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0026	139	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	a0027	139	1	0	1	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX3A_chrX_6528618_6540118	0/0	a0000	0	1	0	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0001	206	27	13	2	7	1	4	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0002	186	7	7	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0003	216	5	5	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	1/0	a0004	186	4	1	0	0	2	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0005	196	3	3	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0006	206	3	0	0	3	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0007	186	2	2	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0008	186	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0009	186	1	0	0	0	0	1	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0010	206	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0011	216	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0012	206	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0013	216	1	0	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118