JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VCX3A_chrX_6528618_6540118	0/0	a0014	206	1	0	0	1	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0015	166	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0016	206	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0017	206	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0018	256	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0019	196	1	0	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0020	246	1	0	0	1	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/1	a0021	216	1	0	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0022	216	1	0	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0023	236	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0024	186	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0025	226	1	0	0	1	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0026	94	1	0	0	0	0	1	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0027	186	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0028	296	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	a0029	206	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3B_chrX_8459830_8471510	0/0	a0000	0	4	0	0	4	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0001	196	45	2	6	31	3	3	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0002	246	30	2	5	9	4	10	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0003	236	22	4	0	17	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0004	186	17	0	12	5	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0005	236	14	8	0	6	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0006	216	8	0	7	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0007	236	6	6	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0008	226	6	0	4	0	1	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0009	186	5	2	3	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0010	196	5	0	3	0	0	2	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0011	206	5	4	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0012	226	4	1	3	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0013	196	4	0	0	4	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0014	216	4	2	2	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0015	236	3	3	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0016	216	3	0	0	3	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0017	236	3	3	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0018	216	3	3	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0019	236	3	1	2	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0020	206	3	0	0	3	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0021	256	3	3	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0022	246	2	0	0	0	0	2	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0023	196	2	0	1	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0024	196	2	0	0	0	0	2	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0025	206	2	0	0	2	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0026	196	2	0	0	2	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0027	216	2	0	0	2	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0028	216	2	0	0	0	0	2	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0029	226	2	0	2	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0030	186	2	1	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0031	7	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0032	64	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0033	216	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510