JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VCX3B_chrX_8459830_8471510	0/0	a0034	216	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0035	206	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/1	a0036	206	1	0	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0037	226	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0038	226	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0039	236	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0040	226	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0041	246	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0042	296	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0043	226	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0044	216	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0045	236	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0046	246	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0047	226	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0048	123	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0049	256	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0050	196	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0051	226	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0052	246	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0053	136	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0054	226	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0055	206	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0056	296	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0057	216	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0058	206	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0059	186	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0060	196	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0061	186	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0062	146	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0063	196	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0064	246	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0065	246	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0066	196	1	0	0	0	1	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0067	226	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0068	246	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0069	206	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0070	226	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0071	276	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0072	266	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0073	206	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0074	182	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0075	133	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0076	136	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0077	166	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0078	206	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0079	186	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0080	46	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0081	196	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0082	61	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	a0083	61	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510