JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BRWD1_chr21_39180482_39318632	0/0	a0010	2269	1	0	0	1	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0011	2269	1	0	0	0	0	1	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0012	2269	1	1	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0013	2269	1	0	0	0	0	1	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0014	2269	1	0	0	1	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0015	2269	1	1	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	a0016	2269	1	0	0	0	0	1	copy fasta	BRWD1	chr21	39180482	39318632
BRWD3_chrX_80664503_80814877	0/0	a0001	1802	258	61	38	119	11	29	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	1/0	a0002	1802	3	2	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	a0003	304	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/1	a0004	1802	1	0	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	a0005	1802	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	a0006	1802	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BSCL2_chr11_62685275_62712424	1/1	a0001	462	301	64	53	139	11	32	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	a0002	462	22	19	3	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	a0003	462	3	3	0	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	a0004	136	1	0	1	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	a0005	462	1	0	0	0	1	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	a0006	462	1	0	1	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	a0007	462	1	0	0	1	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSDC1_chr1_32359633_32399441	1/1	a0001	430	170	84	34	30	6	14	copy fasta	BSDC1	chr1	32359633	32399441
BSG_chr19_567596_588493	1/1	a0001	385	294	71	70	99	16	36	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	a0002	385	2	0	2	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	a0003	385	2	1	0	0	0	1	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	a0004	385	2	0	0	1	0	1	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	a0005	385	2	0	0	2	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	a0006	385	1	0	1	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	a0007	385	1	0	1	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	a0008	385	1	0	0	1	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	a0009	385	1	0	0	1	0	0	copy fasta	BSG	chr19	567596	588493
BSND_chr1_54993933_55022172	1/1	a0001	320	393	81	72	176	16	46	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	a0002	320	51	15	2	34	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	a0003	320	2	0	0	2	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	a0004	320	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	a0005	195	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSN_chr3_49549477_49676549	0/1	a0001	3926	69	23	17	15	3	10	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0002	3926	46	13	14	6	7	6	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	1/0	a0003	3926	31	21	5	0	3	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0004	3926	5	1	3	0	1	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0005	3926	5	5	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0006	3926	4	0	0	4	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0007	3926	2	2	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0008	3926	2	2	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0009	3926	2	0	2	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0010	3926	2	2	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0011	3926	2	0	0	2	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0012	3926	2	0	0	1	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0013	3926	2	0	2	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0014	3926	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0015	3926	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549