JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VDAC1_chr5_133966871_134009975	1/1	a0001	283	394	96	54	194	16	32	copy fasta	VDAC1	chr5	133966871	134009975
VDAC2_chr10_75205796_75236448	1/1	a0001	294	396	92	62	190	14	36	copy fasta	VDAC2	chr10	75205796	75236448
VDAC3_chr8_42386880_42410937	1/1	a0001	283	288	94	22	136	2	32	copy fasta	VDAC3	chr8	42386880	42410937
VDR_chr12_47836537_47909994	0/0	a0001	424	237	79	38	83	6	31	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	1/1	a0002	427	118	15	36	46	8	11	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	a0003	424	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	a0004	424	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	a0005	427	1	0	0	1	0	0	copy fasta	VDR	chr12	47836537	47909994
VEGFA_chr6_43765211_43791487	1/1	a0001	3	446	96	86	198	18	46	copy fasta	VEGFA	chr6	43765211	43791487
VEGFB_chr11_64229584_64244264	1/1	a0001	207	316	87	69	118	6	34	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	a0002	207	2	2	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	a0003	207	2	0	0	2	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	a0004	207	2	2	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	a0005	88	1	0	0	0	0	1	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	a0006	207	1	0	0	0	0	1	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	a0007	126	1	0	0	1	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	a0008	207	1	0	1	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	a0009	207	1	0	0	1	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	a0010	207	1	1	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFC_chr4_176678538_176797922	1/1	a0001	419	220	88	48	46	8	28	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	a0002	420	2	2	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	a0003	419	1	1	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	a0004	419	1	1	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFD_chrX_15340596_15389413	0/0	a0000	0	1	0	0	1	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	1/1	a0001	354	290	76	57	112	11	32	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	a0002	354	8	0	0	8	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	a0003	353	2	2	0	0	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	a0004	113	1	0	0	1	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VENTX_chr10_133232855_133246928	1/1	a0001	258	223	49	48	80	11	33	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0002	258	128	29	24	63	3	9	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0003	258	36	8	8	13	1	6	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0004	258	21	9	1	11	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0005	258	5	0	0	3	0	2	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0006	258	3	2	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0007	258	2	0	0	2	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0008	258	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0009	258	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0010	258	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0011	258	1	0	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0012	258	1	0	0	0	1	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0013	258	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0014	258	1	0	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0015	258	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0016	258	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	a0017	258	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VEPH1_chr3_157254742_157508416	1/1	a0001	833	143	43	23	52	6	17	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0002	833	64	1	15	38	5	5	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0003	833	59	15	4	34	1	5	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0004	833	9	1	0	7	0	1	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0005	833	7	7	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416