JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VEPH1_chr3_157254742_157508416	0/0	a0006	833	5	4	1	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0007	833	4	3	1	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0008	833	2	0	0	2	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0009	833	2	2	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0010	833	1	0	0	1	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0011	833	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0012	833	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0013	833	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0014	833	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0015	833	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0016	833	1	0	0	1	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0017	833	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	a0018	833	1	0	0	1	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEZF1_chr17_57966552_57993254	1/1	a0001	521	224	65	31	84	13	29	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	a0002	522	38	17	6	6	3	6	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	a0003	520	11	9	1	0	0	1	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	a0004	529	1	1	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZT_chr12_95212807_95307799	0/1	a0001	779	256	64	31	138	6	16	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	1/0	a0002	779	107	5	26	58	4	13	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0003	779	26	3	9	6	3	5	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0004	779	16	5	5	0	1	5	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0005	779	10	1	3	2	0	4	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0006	779	4	3	1	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0007	779	1	0	0	0	0	1	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0008	779	1	0	1	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0009	779	1	1	0	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0010	779	1	0	1	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0011	779	1	0	1	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0012	779	1	1	0	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	a0013	779	1	1	0	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VGF_chr7_101157509_101170569	1/1	a0001	615	403	88	58	192	18	45	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	a0002	615	12	0	11	1	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	a0003	615	2	2	0	0	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	a0004	615	1	0	0	0	0	1	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	a0005	615	1	0	0	1	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	a0006	615	1	0	1	0	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	a0007	615	1	1	0	0	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	a0008	615	1	1	0	0	0	0	copy fasta	VGF	chr7	101157509	101170569
VGLL1_chrX_136527215_136561799	1/1	a0001	258	250	59	39	113	5	32	copy fasta	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	a0002	258	7	0	7	0	0	0	copy fasta	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	a0003	258	1	0	1	0	0	0	copy fasta	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	a0004	258	1	1	0	0	0	0	copy fasta	VGLL1	chrX	136527215	136561799
VGLL2_chr6_117260558_117278565	1/1	a0001	317	422	98	74	186	18	44	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	a0002	317	3	0	0	3	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	a0003	317	3	0	0	3	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	a0004	317	1	0	0	1	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	a0005	317	1	0	0	1	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	a0006	317	1	0	0	1	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	a0007	317	1	0	0	1	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL3_chr3_86932973_86996149	1/1	a0001	326	369	90	56	177	12	32	copy fasta	VGLL3	chr3	86932973	86996149