JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VIPR1_chr3_42497643_42542568	0/0	a0007	457	1	0	0	0	0	1	copy fasta	VIPR1	chr3	42497643	42542568
VIPR2_chr7_159023175_159149867	1/1	a0001	438	325	89	68	128	6	32	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	a0002	438	6	5	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	a0003	438	2	0	2	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	a0004	438	2	0	0	2	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	a0005	438	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIP_chr6_152745797_152764760	1/1	a0001	170	429	95	80	190	18	44	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	a0002	170	1	1	0	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	a0003	170	1	0	0	1	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	a0004	170	1	0	0	1	0	0	copy fasta	VIP	chr6	152745797	152764760
VIRMA_chr8_94482689_94558469	1/1	a0001	1812	334	77	62	133	16	44	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0002	1812	2	1	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0003	1812	1	0	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0004	1812	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0005	1812	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0006	1812	1	0	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0007	1812	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0008	1812	1	1	0	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0009	1812	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0010	1812	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0011	1812	1	0	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	a0012	1812	1	1	0	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIT_chr2_36691707_36819794	1/1	a0001	693	246	53	58	91	8	34	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	a0002	693	35	4	2	18	1	10	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	a0003	693	34	21	0	12	1	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	a0004	693	6	6	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	a0005	693	3	3	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	a0006	693	2	0	0	2	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	a0007	693	1	0	0	1	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	a0008	693	1	1	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VKORC1L1_chr7_65868074_65964558	1/1	a0001	176	350	76	70	154	14	34	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1_chr16_31085854_31099797	1/1	a0001	163	309	80	74	101	18	34	copy fasta	VKORC1	chr16	31085854	31099797
VKORC1_chr16_31085854_31099797	0/0	a0002	163	1	0	0	1	0	0	copy fasta	VKORC1	chr16	31085854	31099797
VLDLR_chr9_2616787_2665056	1/1	a0001	873	351	70	70	152	17	40	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	a0002	873	32	18	1	10	1	2	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	a0003	873	2	0	2	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	a0004	873	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	a0005	873	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	a0006	873	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	a0007	873	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	a0008	873	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	a0009	873	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	a0010	873	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VMA21_chrX_151392206_151414364	1/1	a0001	101	288	74	56	119	11	26	copy fasta	VMA21	chrX	151392206	151414364
VMAC_chr19_5899872_5915853	1/0	a0001	169	344	82	51	161	7	42	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/1	a0002	169	37	9	16	2	3	6	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	a0003	169	3	0	3	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	a0004	169	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	a0005	169	1	0	0	1	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMO1_chr17_4780285_4791364	1/0	a0001	202	225	58	38	110	7	11	copy fasta	VMO1	chr17	4780285	4791364