JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VNN2_chr6_132738870_132762904	0/0	a0005	520	1	0	0	1	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	a0006	520	1	1	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	a0007	520	1	1	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	a0008	520	1	0	0	1	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	1/0	a0009	520	1	0	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	a0010	520	1	0	0	0	0	1	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	a0011	520	1	0	0	1	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	a0012	520	1	1	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VOPP1_chr7_55465613_55577502	1/1	a0001	172	315	86	47	130	14	36	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	a0002	172	1	0	0	1	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	a0003	172	1	0	1	0	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	a0004	172	1	0	0	1	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VPREB1_chr22_22239786_22250515	1/1	a0001	145	388	65	65	204	12	40	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	a0002	145	53	32	11	0	2	8	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	a0003	145	1	1	0	0	0	0	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	a0004	145	1	0	1	0	0	0	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	a0005	145	1	0	1	0	0	0	copy fasta	VPREB1	chr22	22239786	22250515
VPREB3_chr22_23747743_23759425	1/1	a0001	123	407	76	77	191	15	46	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	a0002	123	21	19	2	0	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	a0003	123	2	2	0	0	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	a0004	123	1	0	0	1	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	a0005	123	1	0	1	0	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	a0006	123	1	1	0	0	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	a0007	123	1	0	0	0	1	0	copy fasta	VPREB3	chr22	23747743	23759425
VPS11_chr11_119062818_119086972	1/0	a0001	941	228	52	37	99	13	26	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/1	a0002	941	110	35	27	29	3	15	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0003	941	4	4	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0004	941	2	0	0	2	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0005	941	2	0	2	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0006	941	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0007	941	1	0	1	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0008	941	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0009	941	1	0	1	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0010	941	1	1	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0011	941	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0012	941	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0013	941	1	0	0	0	0	1	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0014	941	1	1	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	a0015	941	1	1	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS13A_chr9_77172534_77426537	1/1	a0001	3174	299	65	55	139	6	32	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0002	3174	14	4	1	9	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0003	3174	5	0	0	5	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0004	3174	5	5	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0005	3174	3	0	0	3	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0006	3174	2	0	1	0	1	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0007	3174	2	0	0	0	0	2	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0008	3174	2	0	1	0	0	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0009	3174	2	2	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0010	3174	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0011	3174	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537