JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VPS13A_chr9_77172534_77426537	0/0	a0012	3174	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0013	3174	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0014	3174	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0015	3174	1	0	0	0	1	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0016	3174	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0017	3174	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0018	3174	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0019	3174	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0020	3174	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0021	3174	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0022	3174	1	0	0	0	0	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	a0023	3174	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13B_chr8_99008274_99882580	1/1	a0001	3997	84	13	28	36	5	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0002	3997	16	5	2	7	2	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0003	3997	14	11	2	0	0	1	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0004	3997	2	2	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0005	3997	2	2	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0006	3997	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0007	3997	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0008	3997	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0009	3997	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0010	3997	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0011	3997	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0012	3997	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0013	3997	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0014	3997	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0015	3997	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0016	3997	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0017	3997	1	0	0	0	0	1	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0018	3997	1	0	0	0	1	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0019	3997	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0020	3997	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	a0021	3997	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13C_chr15_61847389_62065447	0/0	a0001	3753	116	30	21	50	4	11	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/1	a0002	3753	55	4	19	23	4	4	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0003	3753	54	0	5	41	0	8	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0004	3753	30	9	5	15	0	1	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0005	3753	15	4	3	6	0	2	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0006	3753	13	4	1	7	0	1	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0007	3753	10	8	2	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0008	3753	6	5	1	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0009	3753	5	0	5	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0010	3753	4	4	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0011	3753	4	0	0	1	2	1	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0012	3753	3	0	0	3	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0013	3753	3	3	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	1/0	a0014	3753	3	2	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0015	3753	2	0	0	2	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0016	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0017	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447