JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VPS13C_chr15_61847389_62065447	0/0	a0018	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0019	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0020	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0021	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0022	3753	1	1	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0023	3753	1	1	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0024	3753	1	1	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0025	3753	1	0	0	0	0	1	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0026	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0027	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0028	3753	1	0	0	0	0	1	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0029	3753	1	0	0	0	1	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0030	3753	1	1	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0031	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0032	3753	1	0	0	0	1	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0033	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0034	3753	1	1	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0035	3753	1	1	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0036	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0037	3753	1	0	0	0	0	1	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0038	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0039	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0040	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0041	3753	1	1	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0042	3753	1	0	0	0	0	1	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0043	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	a0044	3753	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13D_chr1_12225030_12517047	1/1	a0001	4388	122	32	27	43	0	18	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0002	4388	10	1	2	5	0	2	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0003	4388	5	4	1	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0004	4388	2	2	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0005	4388	2	2	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0006	4388	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0007	4388	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0008	4388	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0009	4388	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0010	4388	1	0	1	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0011	4388	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0012	4388	1	0	1	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0013	4388	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0014	4388	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0015	4388	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0016	4388	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0017	4388	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	a0018	4388	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS16_chr20_2835745_2871732	1/1	a0001	839	386	83	62	186	12	41	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0002	839	10	1	1	7	0	1	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0003	839	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0004	839	1	0	0	0	0	1	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0005	839	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732