JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VPS16_chr20_2835745_2871732	0/0	a0006	839	1	1	0	0	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0007	839	1	0	1	0	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0008	839	1	1	0	0	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0009	839	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0010	839	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0011	839	1	0	0	0	1	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0012	839	1	0	0	0	1	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0013	839	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	a0014	839	1	0	0	0	0	1	copy fasta	VPS16	chr20	2835745	2871732
VPS18_chr15_40889450_40908975	1/1	a0001	973	391	92	66	174	14	43	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	a0002	973	7	0	0	7	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	a0003	973	2	0	0	2	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	a0004	973	1	1	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	a0005	973	1	1	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	a0006	973	1	0	0	0	0	1	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	a0007	973	1	0	0	1	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	a0008	973	1	0	0	0	0	1	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	a0009	973	1	0	0	0	0	1	copy fasta	VPS18	chr15	40889450	40908975
VPS25_chr17_42768449_42784599	1/1	a0001	176	287	84	58	92	14	37	copy fasta	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	a0002	176	6	6	0	0	0	0	copy fasta	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	a0003	176	1	0	0	0	0	1	copy fasta	VPS25	chr17	42768449	42784599
VPS26A_chr10_69119178_69179412	1/1	a0001	327	336	86	46	148	14	40	copy fasta	VPS26A	chr10	69119178	69179412
VPS26B_chr11_134219671_134252788	1/1	a0001	336	429	98	80	189	16	44	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	a0002	302	1	0	0	1	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26C_chr21_37218422_37272334	1/1	a0001	297	390	94	75	162	16	41	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	a0002	161	5	0	1	4	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	a0003	297	1	0	0	0	0	1	copy fasta	VPS26C	chr21	37218422	37272334
VPS28_chr8_144418617_144433548	1/1	a0001	221	407	95	74	182	14	40	copy fasta	VPS28	chr8	144418617	144433548
VPS28_chr8_144418617_144433548	0/0	a0002	221	1	1	0	0	0	0	copy fasta	VPS28	chr8	144418617	144433548
VPS29_chr12_110486083_110507111	1/1	a0001	182	310	88	68	104	14	34	copy fasta	VPS29	chr12	110486083	110507111
VPS33A_chr12_122224564_122271494	1/1	a0001	596	325	64	74	134	12	39	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	a0002	596	19	19	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	a0003	596	1	1	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	a0004	596	1	0	0	0	0	1	copy fasta	VPS33A	chr12	122224564	122271494
VPS33B_chr15_90993673_91027594	0/0	a0001	617	318	85	43	156	2	32	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	1/1	a0002	617	51	4	21	0	8	16	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	a0003	617	2	2	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	a0004	617	1	0	0	1	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	a0005	617	1	1	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	a0006	617	1	0	0	1	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS35L_chr16_19550703_19706163	1/1	a0001	963	276	86	46	105	8	29	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	a0002	963	3	3	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	a0003	963	1	0	0	0	0	1	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	a0004	633	1	1	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	a0005	963	1	0	0	0	0	1	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	a0006	963	1	0	0	1	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	a0007	963	1	0	0	0	0	1	copy fasta	VPS35L	chr16	19550703	19706163
VPS35_chr16_46651132_46694178	1/1	a0001	796	218	69	52	53	10	32	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	a0002	796	1	0	0	1	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	a0003	796	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178