JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VPS36_chr13_52407606_52455634	1/1	a0001	386	336	79	70	139	12	34	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	a0002	386	1	1	0	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	a0003	386	1	0	0	1	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS37A_chr8_17241958_17303024	1/1	a0001	397	378	92	64	157	16	47	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	a0002	397	5	0	0	5	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	a0003	397	1	0	0	0	0	1	copy fasta	VPS37A	chr8	17241958	17303024
VPS37B_chr12_122860330_122901124	1/1	a0001	285	264	82	40	94	10	36	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	a0002	285	2	0	0	0	0	2	copy fasta	VPS37B	chr12	122860330	122901124
VPS37C_chr11_61125257_61166426	0/1	a0001	355	162	79	23	25	12	22	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	1/0	a0002	355	27	4	19	1	1	1	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	a0003	355	9	0	3	0	3	3	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	a0004	355	6	0	4	0	0	2	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	a0005	355	3	0	3	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	a0006	355	2	2	0	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	a0007	355	1	0	0	1	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	a0008	355	1	1	0	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	a0009	84	1	0	0	1	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37D_chr7_73662831_73677110	1/1	a0001	251	376	90	72	152	18	42	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	a0002	251	2	0	0	2	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	a0003	251	2	2	0	0	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS39_chr15_42153701_42213304	1/1	a0001	875	331	90	56	139	10	34	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	a0002	875	2	0	0	2	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	a0003	875	1	0	0	0	0	1	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	a0004	875	1	0	0	1	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	a0005	875	1	0	0	0	0	1	copy fasta	VPS39	chr15	42153701	42213304
VPS41_chr7_38717974_38914191	1/1	a0001	854	267	78	50	94	13	30	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	a0002	854	8	0	8	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	a0003	854	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	a0004	854	1	0	0	0	1	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	a0005	854	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS45_chr1_150062776_150150329	1/1	a0001	570	162	76	28	28	8	20	copy fasta	VPS45	chr1	150062776	150150329
VPS45_chr1_150062776_150150329	0/0	a0002	570	13	13	0	0	0	0	copy fasta	VPS45	chr1	150062776	150150329
VPS45_chr1_150062776_150150329	0/0	a0003	570	1	1	0	0	0	0	copy fasta	VPS45	chr1	150062776	150150329
VPS4A_chr16_69306350_69331939	1/1	a0001	437	364	96	73	135	16	42	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	a0002	437	1	0	0	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	a0003	437	1	0	1	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4B_chr18_63384190_63427476	1/1	a0001	444	380	88	68	164	15	43	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	a0002	444	4	0	0	4	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	a0003	444	1	0	0	0	1	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	a0004	444	1	0	0	0	0	1	copy fasta	VPS4B	chr18	63384190	63427476
VPS50_chr7_93227366_93366123	1/1	a0001	964	308	70	50	148	3	35	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	a0002	964	3	3	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	a0003	964	2	2	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	a0004	964	1	1	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	a0005	964	1	0	0	0	0	1	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	a0006	964	1	0	0	0	1	0	copy fasta	VPS50	chr7	93227366	93366123
VPS51_chr11_65091214_65116862	1/1	a0001	782	347	95	64	134	14	38	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	a0002	782	1	1	0	0	0	0	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	a0003	782	1	0	0	1	0	0	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	a0004	782	1	0	0	1	0	0	copy fasta	VPS51	chr11	65091214	65116862