JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BSN_chr3_49549477_49676549	0/0	a0016	3926	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0017	3926	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0018	3926	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0019	3926	1	0	1	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0020	3926	1	0	0	0	1	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0021	3926	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0022	3926	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0023	3926	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0024	3926	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	a0025	3926	1	0	0	0	1	0	copy fasta	BSN	chr3	49549477	49676549
BSPH1_chr19_47963046_47997170	1/1	a0001	132	345	71	59	169	11	33	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	a0002	132	91	18	18	37	5	13	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	a0003	128	7	5	2	0	0	0	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	a0004	132	1	0	1	0	0	0	copy fasta	BSPH1	chr19	47963046	47997170
BSPRY_chr9_113344541_113376222	1/1	a0001	402	361	91	67	160	14	27	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	a0002	402	46	0	6	26	3	11	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	a0003	402	35	1	7	23	0	4	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	a0004	402	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	a0005	402	1	0	1	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	a0006	402	1	0	1	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	a0007	402	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	a0008	402	1	0	0	1	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	a0009	392	1	0	0	0	1	0	copy fasta	BSPRY	chr9	113344541	113376222
BST1_chr4_15698065_15737787	1/0	a0001	318	286	68	55	115	9	38	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	a0002	318	58	6	1	47	0	4	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	a0003	318	44	1	5	36	0	2	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/1	a0004	318	25	0	8	11	5	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	a0005	318	10	10	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	a0006	318	10	9	1	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	a0007	318	3	3	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	a0008	318	2	0	0	1	0	1	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	a0009	318	1	0	0	1	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	a0010	318	1	0	0	1	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	a0011	318	1	1	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	a0012	318	1	0	0	0	0	1	copy fasta	BST1	chr4	15698065	15737787
BST2_chr19_17397939_17410630	1/1	a0001	180	409	89	75	179	16	48	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	a0002	180	1	0	0	1	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	a0003	180	1	1	0	0	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	a0004	180	1	0	1	0	0	0	copy fasta	BST2	chr19	17397939	17410630
BSX_chr11_122972570_122986834	1/1	a0001	233	408	90	66	188	15	47	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	a0002	233	10	10	0	0	0	0	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	a0003	233	2	0	2	0	0	0	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	a0004	233	1	0	0	0	1	0	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	a0005	233	1	0	0	0	0	1	copy fasta	BSX	chr11	122972570	122986834
BTAF1_chr10_91918770_92036437	1/1	a0001	1849	322	87	62	123	11	37	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	a0002	1849	2	0	0	2	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	a0003	1849	1	0	0	1	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	a0004	1411	1	1	0	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	a0005	1849	1	0	0	0	1	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	a0006	1857	1	0	0	1	0	0	copy fasta	BTAF1	chr10	91918770	92036437