JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VPS52_chr6_33245278_33276876	0/1	a0001	723	321	96	55	128	12	29	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	a0002	723	2	0	1	1	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	a0003	634	1	0	0	1	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	a0004	723	1	0	0	0	0	1	copy fasta	VPS52	chr6	33245278	33276876
VPS53_chr17_503668_719839	1/1	a0001	832	155	34	39	56	12	12	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	a0002	832	36	1	8	21	1	5	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	a0003	832	30	3	1	22	3	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	a0004	832	6	0	0	5	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	a0005	832	3	0	0	3	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	a0006	509	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	a0007	832	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS54_chr2_63887150_64024428	1/1	a0001	977	241	70	61	63	15	30	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	a0002	977	48	11	13	13	3	8	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	a0003	977	11	11	0	0	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	a0004	977	3	0	0	3	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	a0005	977	1	0	0	1	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS72_chr1_151171304_151195197	1/1	a0001	364	402	88	68	185	17	42	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	a0002	364	4	1	0	0	1	2	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	a0003	364	1	1	0	0	0	0	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	a0004	364	1	0	0	1	0	0	copy fasta	VPS72	chr1	151171304	151195197
VPS8_chr3_184807166_185057604	1/0	a0001	1428	98	22	19	41	3	12	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0002	1428	73	3	14	42	3	11	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0003	1428	40	20	9	9	1	1	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0004	1428	34	21	6	6	0	1	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0005	1428	6	3	2	0	1	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0006	1428	6	6	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/1	a0007	1428	3	0	1	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0008	1428	2	0	0	2	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0009	1428	2	0	2	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0010	1428	1	0	0	0	0	1	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0011	1428	1	0	0	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0012	1428	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0013	1428	1	0	1	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0014	1428	1	0	0	0	1	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0015	1428	1	0	0	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0016	1428	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0017	1428	1	0	0	0	1	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0018	1428	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	a0019	1428	1	0	0	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS9D1_chr16_89702134_89725898	1/1	a0001	631	413	96	75	176	17	47	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	a0002	631	4	0	0	4	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	a0003	631	3	0	0	3	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	a0004	631	2	1	1	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	a0005	631	1	0	1	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	a0006	631	1	0	1	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	a0007	631	1	1	0	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	a0008	631	1	0	0	1	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	a0009	631	1	0	0	1	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	a0010	631	1	0	0	0	1	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	a0011	631	1	0	0	0	0	1	copy fasta	VPS9D1	chr16	89702134	89725898