JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VSIG10L_chr19_51326541_51347139	0/0	a0002	461	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10_chr12_118058593_118109011	1/0	a0001	540	132	11	38	40	13	29	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0002	538	125	26	14	76	0	9	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0003	540	86	30	17	29	3	7	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0004	540	32	7	1	24	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/1	a0005	538	16	7	1	6	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0006	541	3	3	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0007	539	3	1	1	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0008	539	2	0	1	0	1	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0009	540	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0010	540	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0011	540	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0012	534	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0013	540	1	0	0	0	1	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0014	540	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0015	540	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0016	538	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0017	538	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0018	538	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0019	540	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0020	540	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	a0021	540	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG1_chrX_108040065_108084184	1/0	a0001	387	277	76	51	108	13	28	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/1	a0002	387	2	0	1	0	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	a0003	136	1	0	0	1	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	a0004	387	1	0	1	0	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG2_chr11_124742474_124757255	1/1	a0001	327	376	84	64	167	14	45	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	a0002	327	10	0	0	10	0	0	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	a0003	327	9	8	0	1	0	0	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	a0004	327	9	0	8	0	0	1	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	a0005	327	2	2	0	0	0	0	copy fasta	VSIG2	chr11	124742474	124757255
VSIG4_chrX_66016738_66045080	1/1	a0001	399	206	40	40	83	11	30	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	a0002	399	4	2	2	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	a0003	399	2	0	2	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	a0004	399	2	0	0	0	0	2	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	a0005	70	1	0	0	1	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	a0006	399	1	0	0	1	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	a0007	399	1	1	0	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	a0008	189	1	0	1	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG8_chr1_159849316_159867657	1/1	a0001	414	437	83	79	212	16	45	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	a0002	414	13	11	2	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	a0003	414	4	0	3	0	0	1	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	a0004	414	1	1	0	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	a0005	414	1	0	0	1	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	a0006	200	1	0	0	1	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	a0007	414	1	1	0	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIR_chr10_71742556_71778520	0/0	a0001	311	271	67	48	131	8	17	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/1	a0002	311	128	23	20	49	6	29	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	1/0	a0003	311	55	0	11	37	2	4	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	a0004	311	6	4	2	0	0	0	copy fasta	VSIR	chr10	71742556	71778520