JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VSIR_chr10_71742556_71778520	0/0	a0005	311	1	0	1	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	a0006	206	1	0	0	1	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSNL1_chr2_17535696_17662018	1/1	a0001	191	232	82	54	54	16	24	copy fasta	VSNL1	chr2	17535696	17662018
VSTM1_chr19_54035825_54068897	0/0	a0001	236	318	60	48	165	12	33	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/1	a0002	236	120	36	36	30	6	11	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	a0003	236	1	1	0	0	0	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	a0004	236	1	1	0	0	0	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	a0005	236	1	0	0	1	0	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM2A_chr7_54537375_54576067	1/1	a0001	240	381	90	76	151	18	44	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	a0002	240	1	0	0	1	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2B_chr19_29520994_29569551	0/0	a0001	285	323	97	60	123	9	34	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	a0002	285	76	0	15	54	1	6	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	a0003	285	2	2	0	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	a0004	285	2	0	0	0	0	2	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	a0005	285	1	1	0	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	a0006	285	1	0	1	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	a0007	285	1	0	0	1	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2L_chr20_37898127_37950350	1/1	a0001	204	319	70	67	124	16	40	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	a0002	204	12	11	1	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	a0003	204	7	7	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	a0004	204	2	2	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	a0005	204	2	2	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	a0006	204	2	0	0	0	0	2	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM4_chr10_49009236_49120522	0/1	a0001	320	154	60	33	39	7	14	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	1/0	a0002	320	121	23	19	59	3	16	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	a0003	320	2	0	0	0	0	2	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	a0004	320	1	0	0	1	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	a0005	320	1	0	0	1	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	a0006	320	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM5_chr11_93813232_93855618	1/1	a0001	200	343	86	63	143	12	37	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	a0002	200	10	4	3	1	2	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	a0003	200	2	2	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	a0004	200	2	0	0	2	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	a0005	200	2	2	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	a0006	200	1	0	0	0	0	1	copy fasta	VSTM5	chr11	93813232	93855618
VSX1_chr20_25070463_25087141	1/1	a0001	365	330	77	66	125	14	46	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	a0002	365	19	19	0	0	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	a0003	365	8	4	4	0	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	a0004	365	4	0	0	4	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	a0005	365	3	0	0	3	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	a0006	365	1	0	0	1	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	a0007	365	1	0	0	1	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	a0008	365	1	0	0	1	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	a0009	365	1	0	0	1	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX2_chr14_74234449_74267738	1/1	a0001	361	402	87	66	186	14	47	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	a0002	361	11	0	8	2	0	1	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	a0003	362	5	5	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	a0004	361	1	0	0	1	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	a0005	361	1	0	0	1	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	a0006	361	1	1	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738