JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VSX2_chr14_74234449_74267738	0/0	a0007	361	1	1	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VTA1_chr6_142142263_142229685	1/1	a0001	307	327	86	60	140	10	29	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	a0002	307	4	3	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	a0003	307	1	0	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	a0004	307	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	a0005	307	1	0	0	0	0	1	copy fasta	VTA1	chr6	142142263	142229685
VTCN1_chr1_117138587_117215927	1/1	a0001	282	242	89	43	60	12	36	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	a0002	282	6	5	1	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTI1A_chr10_112442215_112823744	1/1	a0001	217	166	64	16	64	6	14	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	a0002	217	1	0	0	1	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	a0003	217	1	0	0	1	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1B_chr14_67642085_67679632	1/1	a0001	232	444	98	85	200	18	41	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	a0002	232	1	0	0	0	0	1	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	a0003	232	1	0	1	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTN_chr17_28362284_28375307	0/0	a0001	478	220	59	44	89	8	20	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	1/1	a0002	478	161	31	37	59	6	26	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	a0003	478	3	3	0	0	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	a0004	478	1	0	1	0	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	a0005	196	1	0	0	1	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	a0006	478	1	0	0	1	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	a0007	478	1	0	0	1	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	a0008	478	1	0	0	1	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	a0009	478	1	1	0	0	0	0	copy fasta	VTN	chr17	28362284	28375307
VWA1_chr1_1430690_1447882	1/1	a0001	445	261	74	41	102	9	33	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	a0002	445	15	8	3	2	1	1	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	a0003	445	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	a0004	445	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	a0005	445	1	0	1	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	a0006	445	1	0	1	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA2_chr10_114234254_114299489	0/0	a0001	755	79	35	19	15	2	8	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	1/1	a0002	755	68	13	25	16	3	9	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0003	755	39	21	9	1	4	4	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0004	755	12	1	1	7	0	3	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0005	755	11	1	3	5	0	2	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0006	755	9	2	2	5	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0007	755	4	4	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0008	755	3	0	2	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0009	755	3	0	0	3	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0010	755	3	0	2	0	1	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0011	755	1	0	0	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0012	755	1	0	0	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0013	755	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0014	755	1	0	1	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0015	755	1	0	0	0	0	1	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0016	755	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0017	755	1	0	0	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0018	732	1	0	0	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0019	755	1	0	0	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0020	755	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0021	755	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489