JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VWA2_chr10_114234254_114299489	0/0	a0022	755	1	0	0	0	0	1	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0023	755	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0024	755	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	a0025	755	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA3A_chr16_22087541_22161964	0/0	a0001	1184	97	21	17	46	1	12	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0002	1184	81	28	1	45	1	6	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/1	a0003	1184	38	3	18	4	4	8	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	1/0	a0004	1184	21	1	2	15	0	2	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0005	1184	14	6	1	5	0	2	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0006	1184	8	0	3	0	0	5	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0007	1184	6	0	0	6	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0008	1184	3	0	1	0	0	2	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0009	1184	2	2	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0010	231	2	0	0	2	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0011	1184	2	2	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0012	1184	2	0	0	2	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0013	1184	2	2	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0014	1184	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0015	1184	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0016	1184	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0017	1184	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0018	1184	1	0	0	0	0	1	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0019	1184	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0020	1184	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0021	1184	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0022	1184	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0023	1184	1	0	1	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0024	1184	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0025	1184	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0026	1184	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0027	1184	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0028	1184	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	a0029	1184	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3B_chr2_98082167_98318299	0/1	a0001	1294	96	19	19	44	3	10	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0002	1294	63	13	20	22	7	1	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0003	1294	30	10	4	14	1	1	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0004	1294	10	0	1	9	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0005	1294	6	6	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0006	1294	6	5	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0007	1294	4	0	4	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0008	1294	3	3	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0009	1294	2	0	2	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0010	1294	2	0	0	0	1	1	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0011	1294	2	0	0	0	2	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0012	218	2	0	0	2	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0013	1294	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0014	371	1	0	0	0	1	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0015	1294	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0016	1294	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0017	1294	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299